Research Article |
Corresponding author: Suranjan Karunarathna ( suranjan.karu@gmail.com ) Corresponding author: Kanishka D.B. Ukuwela ( kanishkauku@gmail.com ) Academic editor: Rafe Brown
© 2021 Suranjan Karunarathna, Anslem De Silva, Dinesh Gabadage, Madhava Botejue, Majintha Madawala, Kanishka D.B. Ukuwela.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Karunarathna S, De Silva A, Gabadage D, Botejue M, Madawala M, Ukuwela KDB (2021) A new species of day gecko (Reptilia, Gekkonidae, Cnemaspis Strauch, 1887) from Sri Lanka with an updated ND2 gene phylogeny of Sri Lankan and Indian species. Zoosystematics and Evolution 97(1): 191-209. https://doi.org/10.3897/zse.97.60099
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A new day gecko of the genus Cnemaspis Strauch, 1887 is described from the intermediate bioclimatic zone (Haputale Forest and Idalgashinna Forest in Badulla District) of Sri Lanka. The new species belongs to the Cnemaspis kandiana clade and was recorded from granite caves and abandoned buildings within forested areas. The region in which these habitats are located, receives relatively high annual rainfall (2500–3500 mm) and has fairly cool, moist and well-shaded conditions. The new species is medium in size (30.2–32.9 mm SVL) and can be differentiated from all other Sri Lankan Cnemaspis by the presence of small subcaudals, heterogenous dorsal scales, smooth pectoral and ventral scales, 7 or 8 supralabials and infralabials, 143–159 ventral scales, 15–17 belly scales, 95–103 mid-body scales, 122–132 paravertebrals, 3 pre-anal pores, 4 or 5 femoral pores and 17 or 18 lamellae on 4th toe. The species described herein is categorised as Critically Endangered (CR) under the IUCN Red List Criteria. The major threats for the new species are habitat loss due to expansion of commercial-scale agriculture and illicit forest encroachments. Therefore, we recommend relevant authorities to take immediate conservation action to ensure the protection of these forest areas in Haputale and Idalgashinna along with the buffer zone in the near future.
Conservation, genetic distance, granite caves, mtDNA, montane rainforests, species delimitation, taxonomy
The tropical island of Sri Lanka has a rich and diverse assemblage of reptiles that comprises a total of 238 species, of which 155 (65%) are endemic and 107 are threatened with extinction (
During the past two decades, the number of species recognised in the genus Cnemaspis in Sri Lanka has grown rapidly with more than a nine-fold increase (from 4 to 37 species) as a result of the recent taxonomic renaissance (
We conducted field surveys in 165 different locations distributed across several bioclimatic regions (e.g. dry zone, intermediate zone and wet zone) in Sri Lanka as a part of an on-going island-wide survey of lizards under permit number WL/3/2/42/18 (a & b), issued by the Department of Wildlife Conservation and permit number R&E/RES/NFSRCM/2019-04, issued by the Forest Department of Sri Lanka. At each location, we surveyed and documented gecko species found with special attention on the focal genus Cnemaspis. On average, per location, we spent 12 man-hours per survey. Museum acronyms follow
Additional information on the morphology and natural history of Sri Lankan Cnemaspis species was extracted from the relevant literature (
To determine the genetic distinction of the new species to already-known species of Cnemaspis, we examined the mitochondrial NADH dehydrogenase subunit 2 (ND2) gene. ND2 gene is commonly used as a barcode marker for geckos and the majority of DNA sequences available on GenBank for Sri Lankan and Indian Cnemaspis species are of this gene. Additionally, we included two Cnemaspis (C. rammalensis [n = 2] and C. rajakarunai [n = 3]) species that have not been included in previous phylogenies. Genetic distinction was determined through examining the haplotype clusters through phylogenetic analysis (
Whole genomic DNA was isolated from the tissue samples using a Qiagen DNeasy blood and tissue DNA isolation kit (Valencia, CA, USA) following the manufacture’s protocols. The quality of the isolated DNA was determined through gel electrophoresis in ethidium bromide stained 1% Agarose gel. The concentration of the isolated DNA samples was quantified using a Nabi Nano-spectrophotometer (MicroDigital Company Ltd, Korea). We PCR amplified a 1040 bp fragment of the ND2 gene using already-published primers L4437a, AAGCTTTCGGGCCCATACC and H5934, AGRGTGCCAATGTCTTTGTGRTT (
Consensus sequences from forward and reverse reads were assembled in Geneious v.5.6 software (
The mitochondrial ND2 gene tree was reconstructed using Bayesian and Maximum Likelihood (ML) methods. Partitioning schemes and best-fit substitution models for each partition were assessed using the Bayesian Information Criterion (BIC) implemented in Partitionfinder 2 (
Species delimitation analysis using Poisson Tree Process (PTP) (
Forty morphometric measurements were taken using a Mitutoyo digital Vernier calliper (to the nearest 0.1 mm) and detailed observations of scales and other structures were made through Leica Wild M3Z and Leica EZ4 dissecting microscopes. The following symmetrical meristic characters were taken on the left side of the body: eye diameter (ED), horizontal diameter of eye ball; orbital diameter (OD), the greatest diameter of orbit; eye to nostril length (EN), the distance between anteriormost point of the orbit and the posterior border of the nostril; snout length (ES), the distance between anteriormost point of the orbit and the tip of snout; snout to nostril length (SN), the distance between tip of snout and the anteriormost point of the nostril; nostril width (NW), the maximum horizontal width of the nostrils; eye to ear distance (EE), the distance between the posterior border of eye and the anteriormost point of ear opening; snout to axilla distance (SA), the distance between axilla and tip of snout; ear length (EL), the maximum length of the ear opening; interorbital width (IO), the shortest distance between the left and right supraciliary scale rows; inter-ear distance (IE) the distance across the head between the two ear openings; head length (HL), the distance between posterior edge of mandible and the tip of the snout; head width (HW), the maximum width of the head in-between the ears and the orbits; head depth (HD), the maximum height of the head at the level of the eye; jaw length (JL), the distance between the tip of snout and the corner of the mouth; internarial distance (IN), the smallest distance between the inner margins of nostrils; snout to ear distance (SED), the distance between the tip of snout and anteriormost point of the ear; upper-arm length (UAL), the distance between the axilla and the angle of the elbow; lower-arm length (LAL), the distance from the elbow to the wrist with palm flexed; palm length (PAL), the distance between the wrist (carpus) and the tip of longest finger excluding the claw; length of digits I–V of manus (DLM), the distance between the juncture of the basal phalanx with the adjacent digit and the tip of the digit, excluding the claw; snout-vent length (SVL), the distance between tip of snout and the anterior margin of vent; trunk length (TRL), the distance between the axilla and the groin; trunk width (TW), the maximum width of body; trunk depth (TD), the maximum depth of body; femur length (FEL), the distance between the groin and the knee; tibia length (TBL), the distance from the knee to the heel with ankle dorsiflexed; heel length (HEL), the distance between ankle (tarsus) and the tip of longest toe (excluding the claw) with both foot and tibia flexed; length of pedal digits I–V (DLP), the distance between the juncture of the basal phalanx with the adjacent digit and the digit tip, excluding the claw; tail length (TAL), the distance between the anterior margin of the vent and the tail tip; tail base depth (TBD), the maximum height of the tail base; tail base width (TBW), the widest point of the tail base.
Thirty discrete characters were observed and recorded using Leica Wild M3Z and Leica EZ4 dissecting microscopes on both the left (L) and the right (R) side of the body (reported in the form L/R): number of supralabials (SUP) and infralabials (INF) between the first labial scale and the corner of the mouth; number of interorbital scales (INOS) between the left and right supraciliary scale rows; number of postmentals (PM) bounded by chin scales, 1st infralabial on the left and right and the mental; number of chin scales (CHS) touching medial edge of infralabials and mental between juncture of 1st and 2nd infralabials on the left and right; number of supranasal (SUN) scales between nares; presence of the postnasal (PON) scales posterior to the naris; presence of the internasal (INT) scale between supranasals; number of supraciliary scales (SUS) above the eye; number of scales between the eye and tympanum (BET) from posterior-most point of the orbit to anterior-most point of the tympanum; number of canthal scales (CAS), number of scales from posterior-most point of naris to anteriormost point of the orbit; total lamellae on manus I–V (TLM) counted from first proximal enlarged scansor, greater than twice width of the largest palm scale, to distalmost lamella at tip of digits; number of dorsal paravertebral granules (PG) between pelvic and pectoral limb insertion points along a straight line immediately left of the vertebral column; number of mid-body scales (MBS) from the centre of mid-dorsal row diagonally towards the ventral scales; number of mid-ventral scales (MVS) from the first scale posterior to the mental to last scale anterior to the vent; number of belly scales (BLS) across the ventre between the lowest rows of granular dorsal scales; total lamellae on pes I–V (TLP), counted from first proximal enlarged scansor greater than twice the width of the largest heel scale, to distalmost lamella at tip of digits; number of precloacal pores (PCP) anterior to the cloaca; number of femoral pores (FP) present on the femur; numbers of non-pored proximal femoral scales (PFS) counted from proximal ends of femoral pore rows to precloacal pores; numbers of non-pored distal femoral scales (DFS) counted from distal ends of femoral pore rows to knee. In addition, we also evaluated the texture [keeled (KD) or smooth (SM)] of the ventral scales, the texture [heterogeneous (HET) or homogeneous (HOM)] of the dorsal scales, the number of spinous scales on the flanks (FLSP) and characteristics, such as appearance of the caudal scales (except in specimens with regenerated tails). Colouration was determined from digital images of living specimens and also from direct observations in the field.
During the surveys, behavioural and other aspects of natural history of the focal species were observed through opportunistic and non-systematic means. The ambient temperature and the substrate temperature were measured using a standard thermometer and a N19 Q1370 infrared thermometer (Dick Smith Electronics, Shanghai, China), respectively. The relative humidity and light intensity were measured with a QM 1594 multifunction environment meter (Digitek Instruments Co., Ltd., Hong Kong, China). To record elevation and georeference species locations, an eTrex 10 GPS (Garmin) was used. Sex was determined by the presence of hemipenial bulges, precloacal and femoral pores in males (M) or absence of the above in females (F). The conservation status of the species was evaluated using IUCN Red List Categories and Criteria version 14 (IUCN 2019).
Both ML (Supplementary Fig.
Bayesian all compatible ND2 gene tree of South Asian Cnemaspis lineage. Dark circles depict nodes with Bayesian posterior probability ≥ 0.95 and Bootstrap support ≥ 70. The outgroup Calodactylodes illingworthorum is not shown. Scale bar indicates the number of substitutions per site. Colours of the branches indicate the geographical origin of the taxa where green, blue and brown depict Sri Lankan, Indian and Southeast Asian taxa, respectively. Results of molecular species delimitation analyses (bPTP and PTP) are shown in grey bars on the right.
The average uncorrected pair-wise genetic distance between Cnemaspis sp. 5 and other taxa in the C. podihuna clade was 26.3% (range 23.9–28.3%), while it was 20.0% (range 22.1–34.3%) between Cnemaspis sp. 5 and Indian Cnemaspis species exclusive of the members of the C. kandiana clade. The average uncorrected pair-wise genetic distance between Cnemaspis sp. 5 and other taxa in the C. kandiana clade was 7.8% (range 6.6–10.4%) (Table
Uncorrected pairwise genetic distances in the ND2 gene between the Cnemaspis sp.5 (Cnemaspis sp. 4 in
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1. C. butewai | – | ||||||||||||||||||
2. C. kumarasinghei | 9.5 | - | |||||||||||||||||
3. C. gotaimbarai | 11.2 | 8.5 | - | ||||||||||||||||
4. C. ingerorum | 8.8 | 7.7 | 8.5 | - | |||||||||||||||
5. C. kallima | 7.4 | 6.6 | 8.8 | 5.4 | - | ||||||||||||||
6. C. kandiana | 8.2 | 7.0 | 8.9 | 6.2 | 4.6 | - | |||||||||||||
7. C. kohukumburai | 7.4 | 8.0 | 9.9 | 6.3 | 5.1 | 5.8 | - | ||||||||||||
8. C. latha | 8.5 | 8.7 | 9.7 | 7.2 | 5.7 | 7.2 | 4.5 | - | |||||||||||
9. C. modiglianii | 10.6 | 9.5 | 11.7 | 8.1 | 6.3 | 7.3 | 7.6 | 8.1 | - | ||||||||||
10. C. nandimithrai | 8.6 | 6.5 | 7.6 | 5.9 | 5.5 | 6.1 | 6.2 | 6.7 | 8.2 | - | |||||||||
11. C. pava | 7.7 | 7.7 | 9.3 | 6.3 | 5.5 | 5.9 | 6.3 | 6.1 | 8.4 | 7.6 | - | ||||||||
12. C. pulchra | 5.0 | 9.0 | 10.6 | 7.9 | 6.6 | 7.6 | 6.4 | 7.3 | 9.8 | 7.4 | 7.7 | - | |||||||
13. C. retigalensis | 9.5 | 7.7 | 10.9 | 7.6 | 4.6 | 5.6 | 6.4 | 8.1 | 8.1 | 7.6 | 7.2 | 8.5 | - | ||||||
14. C. samanalensis | 9.8 | 8.7 | 11.1 | 8.5 | 6.3 | 7.2 | 7.5 | 8.2 | 8.7 | 8.8 | 5.8 | 8.6 | 8.4 | - | |||||
15. C. silvula | 9.4 | 8.0 | 9.0 | 5.4 | 6.0 | 6.5 | 6.7 | 7.8 | 8.4 | 6.2 | 7.6 | 8.1 | 7.9 | 8.4 | - | ||||
16. Cnemaspis sp. 1 | 8.2 | 7.0 | 9.4 | 6.4 | 4.5 | 6.3 | 6.1 | 6.7 | 7.8 | 6.5 | 6.7 | 7.5 | 6.7 | 7.3 | 6.4 | - | |||
17. Cnemaspis sp. 3 | 5.8 | 9.3 | 10.3 | 7.5 | 7.0 | 8.2 | 6.3 | 7.2 | 10.5 | 7.6 | 8.1 | 2.8 | 9.1 | 9.3 | 8.2 | 8.2 | - | ||
18. Cnemaspis sp. 4 | 5.1 | 9.1 | 10.8 | 8.2 | 7.0 | 7.9 | 7.0 | 7.8 | 10.3 | 7.6 | 7.8 | 2.7 | 8.8 | 9.4 | 8.8 | 6.6 | 3.6 | - | |
19. Cnemaspis sp. 5 | 8.3 | 8.6 | 10.4 | 7.4 | 6.6 | 7.7 | 6.8 | 7.9 | 9.0 | 6.6 | 8.2 | 6.9 | 7.5 | 9.2 | 8.3 | 6.6 | 7.1 | 7.4 | – |
20. C. upendrai | 8.2 | 7.0 | 9.9 | 7.2 | 5.1 | 5.8 | 5.9 | 6.8 | 7.7 | 7.4 | 3.7 | 7.3 | 6.6 | 5.3 | 7.2 | 5.7 | 7.9 | 7.8 | 7.8 |
Species delimitation analyses using PTP implementing the Maximum Likelihood (PTP) approach indicated the presence of two species within Cnemaspis sp. 5, but with low support (ML support: 0.29). However, Bayesian approach (bPTP) indicated the presence of a single species within Cnemaspis sp. 5 (Bayesian support: 0.71).
Cnemaspis
sp. 5
Cnemaspis
sp. 4
Cnemaspis lokugei sp. nov., can be readily distinguished from its Sri Lankan congeners by a combination of the following morphological and meristic characteristics: maximum SVL 32.9 mm; dorsum scalation heterogeneous, mixed with smooth and keeled large granular scales; 1/1 supranasals, 1 internasal, 1/1 postnasal; 3 enlarged postmentals; postmentals bounded by 5 enlarged chin scales; chin, gular, pectoral and abdominal scales smooth, subimbricate; 15–17 belly scales across mid-body; 5 or 6 feebly-developed tubercles on posterior flank; 122–132 paravertebral granules linearly arranged; 3 precloacal pores, 4 or 5 femoral pores in males, separated by 8 or 9 proximal femoral scales lacking pores, 7 or 8 distal femoral scales lacking pores; 143–159 ventral scales; 95–103 mid-body scales; smooth subcaudals, median row comprising an irregular series of diamond shaped, small scales; 7 or 8 supralabials; 7 or 8 infralabials; 15 or 16 total lamellae on fourth digit of manus and 17 or 18 total lamellae on fourth digit of pes.
An adult male, 32.9 mm SVL and 36.9 mm TAL (regenerated). Body slender, relatively short (TRL/SVL ratio 39.9%). Head relatively small (HL/SVL ratio 27.7% and HL/TRL ratio 69.5%), narrow (HW/SVL ratio 14.2% and HW/HL ratio 51.2%), depressed (HD/SVL ratio 10.1% and HD/HL ratio 36.4%) and distinct from neck. Snout relatively long (ES/HW ratio 75.5% and ES/HL ratio 38.6%), less than twice the eye diameter (ED/ES ratio 53.4%), more than half length of jaw (ES/JL ratio 64.8%), snout slightly concave in lateral view; eye relatively small (ED/HL ratio 20.6%), larger than the ear (EL/ED ratio 43.6%), pupil round; orbit length greater than eye to ear distance (OD/EE ratio 125.8%) and equal to length of digit IV of manus (OD/DLM IV ratio 100%); supraocular ridges moderately developed; ear opening small (EL/HL ratio 9.0%), deep, taller than wide, larger than nostrils; two rows of scales separate orbit from supralabials; interorbital distance is a little shorter than snout length (IO/ES ratio 97.7%), shorter than head length (IO/HL ratio 37.8%); eye to nostril distance greater than the eye to ear distance (EN/EE ratio 102.8%).
Dorsal surface of the trunk with smooth scales intermixed with keeled heterogeneous granules, 132 paravertebral granules; 148 smooth, mid-ventral scales; 95 mid-body scales; 6/5 weakly-developed tubercles on the flanks; ventrolateral scales small, irregular; granules on snout oval, keeled and raised, larger than those on interorbital and occipital regions; canthus rostralis nearly absent, 13/13 smooth oval scales from eye to nostril; scales of the interorbital region circular and keeled; short tubercles present both on the sides of the neck and around the ear; ear opening vertically oval, slanting from anterodorsal to posteroventral, 21/20 scales between anterior margin of the ear opening and the posterior margin of the eye. Supralabials 7/7, infralabials 8/7, becoming smaller towards the posterior end of the mouth. Rostral scale wider than long, partially divided (80%) by a median groove and in contact with first supralabial. Nostrils separated by 1/1 enlarged supranasals with 1 internasal; few enlarged scales behind the supranasals. Nostrils oval, dorsolaterally orientated, not in contact with first supralabials; 1/1 postnasals, smooth, larger than nostrils, partially in contact with first supralabial (Fig.
Cnemaspis lokugei sp. nov. male holotype (
Mental, sub-rhomboid in shape, as wide as long, posteriorly in contact with 3 enlarged postmentals (smaller than mental and lager than chin scales); postmentals in contact and bordered posteriorly by 5 unkeeled chin scales (larger than nostrils), in contact with the 1st infralabial; ventral scales smaller than chin scales. Smooth, rounded, juxtaposed scales on the chin and the gular region; pectoral and abdominal scales smooth, subimbricate towards precloacal region, abdominal scales slightly larger than dorsals; 17 belly scales across ventre; smooth scales around vent and base of tail, subimbricate; 3 precloacal pores; 4/5 femoral pores; 8/9 proximal femoral scales lacking pores on each side; 7/8 enlarged distal femoral scales. Regenerated tail little longer than the snout-vent length (TAL/SVL ratio 112.2%); hemipenial bulge moderately swollen (TBW 2.8 mm), heterogeneous scales on the dorsal aspect of the tail directed backwards, spine-like tubercles present at the base of tail; tail with 3 or 4 enlarged flattened obtuse scales forming whorls; a large, blunt post-cloacal spur on each side, dorsoventrally flattened and narrow; subcaudals smooth and small, subrhomboidal, arranged in a single median series (Fig.
Forelimbs very short, slender (LAL/SVL ratio 11.6% and UAL/SVL ratio 13.1%); hind limbs long, tibia little longer than the femur (TBL/SVL ratio 16.7% and FEL/SVL ratio 15.8%). Scales on anterior, upper, posterior and ventral surfaces of upper arm with keeled granules and less imbricate scales, scales of the anterior surface twice as large as those of the other surfaces; anterior, upper, posterior and ventral surfaces of lower arm with keeled and less imbricate scales, scales of the upper surface twice as large as those of the other surfaces. Scales on anterior, upper, posterior surfaces of femur keeled, ventral surface with smooth, subimbricate scales, scales on the ventral surface twice the size of those of other aspects; anterior, upper, posterior surfaces of tibia keeled, ventral surface with smooth, imbricate scales, scales on the upper surface twice the size of those of other aspects. Dorsal and ventral surfaces of manus and pes with keeled granules; dorsal surfaces of digits with granular scales (Fig.
(Tables
Morphometric measurements (mm) of holotype from Haputale and two paratypes from Idalgashinna of Cnemaspis lokugei sp. nov. from Badulla District, Sri Lanka (“–” = not applicable).
Measurement |
|
|
|
Range | Mean±SD |
---|---|---|---|---|---|
Holotype (M) | Paratype (F) | Paratype (F) | |||
Snout-vent length | 32.9 | 30.8 | 30.2 | 30.2–32.9 | 31.3±1.4 |
Trunk length | 13.1 | 12.3 | 12.4 | 12.3–13.1 | 12.6±0.4 |
Trunk width | 5.2 | 5.4 | 5.3 | 5.2–5.4 | 5.3±0.1 |
Trunk depth | 3.6 | 3.4 | 3.4 | 3.4–3.6 | 3.5±0.1 |
Head length | 9.1 | 8.9 | 8.9 | 8.9–9.1 | 9.0±0.1 |
Head width | 4.7 | 4.6 | 4.4 | 4.4–4.7 | 4.6±0.1 |
Head depth | 3.3 | 2.8 | 2.8 | 2.8–3.3 | 3.0±0.3 |
Snout to axilla distance | 15.9 | 14.3 | 14.4 | 14.3–15.9 | 14.9±0.9 |
Jaw length | 5.4 | 5.3 | 5.3 | 5.3–5.4 | 5.4±0.1 |
Tail length | 36.9 | 35.1 | 34.4 | 34.4–36.9 | 35.5±1.3 |
Tail base width | 2.8 | 2.4 | 2.4 | 2.4–2.8 | 2.6±0.2 |
Tail base depth | 2.5 | 2.1 | 2.2 | 2.2–2.5 | 2.3±0.2 |
Eye diameter | 1.9 | 1.7 | 1.7 | 1.7–1.9 | 1.7±0.1 |
Orbital diameter | 3.1 | 2.9 | 2.9 | 2.9–3.1 | 3.0±0.1 |
Eye to nostril length | 2.6 | 2.4 | 2.5 | 2.4–2.6 | 2.5±0.1 |
Snout length | 3.5 | 3.1 | 3.1 | 3.1–3.5 | 3.3±0.2 |
Snout to nostril length | 1.3 | 1.2 | 1.2 | 1.2–1.3 | 1.2±0.1 |
Nostril width | 0.2 | 0.2 | 0.2 | – | 0.2±0.0 |
Eye to ear distance | 2.5 | 2.4 | 2.3 | 2.3–2.5 | 2.4±0.1 |
Ear length | 0.8 | 0.7 | 0.7 | 0.7–0.8 | 0.8±0.1 |
Interorbital width | 3.4 | 3.3 | 3.4 | 3.3–3.4 | 3.4±0.1 |
Inter-ear distance | 3.6 | 3.5 | 3.5 | 3.5–3.6 | 3.5±0.0 |
Internarial distance | 1.5 | 1.3 | 1.4 | 1.3–1.5 | 1.4±0.1 |
Snout to ear distance | 8.3 | 8.2 | 8.2 | 8.2–8.3 | 8.2±0.1 |
Upper-arm length | 4.3 | 4.3 | 4.2 | 4.2–4.3 | 4.3±0.1 |
Lower-arm length | 3.8 | 3.7 | 3.6 | 3.6–3.8 | 3.7±0.1 |
Palm length | 3.2 | 2.9 | 3.1 | 2.9–3.2 | 3.1±0.1 |
Digits length of manus (i) | 1.4 | 1.5 | 1.5 | 1.4–1.5 | 1.5±0.1 |
Digits length of manus (ii) | 1.8 | 1.8 | 1.9 | 1.8–1.9 | 1.8±0.1 |
Digits length of manus (iii) | 2.5 | 2.4 | 2.3 | 2.3–2.5 | 2.4±0.1 |
Digits length of manus (iv) | 3.1 | 2.9 | 3.1 | 2.9–3.1 | 3.0±0.1 |
Digits length of manus (v) | 2.3 | 2.2 | 2.1 | 2.1–2.3 | 2.2±0.1 |
Femur length | 5.2 | 5.1 | 5.1 | 5.1–5.2 | 5.2±0.1 |
Tibia length | 5.5 | 5.4 | 5.3 | 5.3–5.5 | 5.4±0.1 |
Heel length | 4.1 | 3.9 | 3.9 | 3.9–4.1 | 4.0±0.1 |
Digits length of pes (i) | 1.5 | 1.3 | 1.4 | 1.3–1.5 | 1.4±0.1 |
Digits length of pes (ii) | 2.9 | 2.7 | 2.6 | 2.6–2.9 | 2.7±0.1 |
Digits length of pes (iii) | 3.4 | 3.5 | 3.2 | 3.2–3.5 | 3.4±0.1 |
Digits length of pes (iv) | 3.9 | 3.8 | 3.8 | 3.8–3.9 | 3.8±0.0 |
Digits length of pes (v) | 3.5 | 3.4 | 3.3 | 3.3–3.5 | 3.4±0.1 |
Meristic data of holotype from Haputale and two paratypes from Idalgashinna of Cnemaspis lokugei sp. nov. from Badulla District, Sri Lanka (“–” = not applicable).
Character |
|
|
|
Range |
---|---|---|---|---|
Holotype (M) | Paratype (F) | Paratype (F) | ||
Supralabials (L, R) | 7, 7 | 7, 8 | 7, 8 | 7–8 |
Infralabial (L, R) | 8, 7 | 7, 7 | 7, 7 | 7–8 |
Lateral spines (L, R) | 6, 5 | 5, 5 | 5, 6 | 5–6 |
Interorbital scales | 26 | 24 | 25 | 24–26 |
Postmentals | 3 | 3 | 3 | – |
Chin scales | 5 | 5 | 5 | – |
Supranasal (L, R) | 1,1 | 1,1 | 1,1 | – |
Postnasal (L, R) | 1,1 | 1,1 | 1,1 | – |
Internasal | 1 | 1 | 1 | – |
Supraciliary (L, R) | 15, 14 | 15, 15 | 14, 16 | 14–16 |
Eye to tympanum scales (L, R) | 21, 20 | 20, 20 | 19, 21 | 19–21 |
Canthal scales (L, R) | 13, 13 | 13, 12 | 12, 12 | 12–13 |
Total lamellae on manus (i) (L, R) | 10, 11 | 10, 10 | 10, 10 | 10–11 |
Total lamellae on manus (ii) (L, R) | 13, 14 | 14, 14 | 13, 14 | 13–14 |
Total lamellae on manus (iii) (L, R) | 16, 16 | 15, 16 | 15, 15 | 15–16 |
Total lamellae on manus (iv) (L, R) | 16, 15 | 15, 15 | 15, 15 | 15–16 |
Total lamellae on manus (v) (L, R) | 15, 15 | 14, 14 | 15, 15 | 14–15 |
Paravertebral granules | 132 | 128 | 122 | 122–132 |
Mid-body scales | 95 | 98 | 103 | 95–103 |
Mid-ventral scales | 148 | 159 | 143 | 143–159 |
Belly scales | 17 | 17 | 15 | 15–17 |
Total lamellae on pes (i) (L, R) | 11, 10 | 11, 11 | 10, 10 | 10–11 |
Total lamellae on pes (ii) (L, R) | 15, 15 | 14, 15 | 15, 15 | 14–15 |
Total lamellae on pes (iii) (L, R) | 17, 18 | 18, 18 | 17, 18 | 17–18 |
Total lamellae on pes (iv) (L, R) | 18, 18 | 17, 17 | 18, 17 | 17–18 |
Total lamellae on pes (v) (L, R) | 17, 17 | 16, 17 | 16, 17 | 16–17 |
Precloacal pores | 3 | absent | absent | – |
Femoral pores (L, R) | 4,5 | absent | absent | 4–5 |
Proximal femoral scales (L, R) | 8, 9 | absent | absent | 8–9 |
Distal femoral scales (L, R) | 7, 8 | absent | absent | 7–8 |
Dorsum of head, body and limbs generally reddish-brown; yellow spot with black outer edge on neck dorsally; broken faded, yellow vertebral stripe running from occiput to tail (Fig.
Cnemaspis lokugei sp. nov. male holotype (
Dorsally grey brown with seven distinct dark, irregular blotches; pale spot with dark outer edge on neck dorsally; supralabials and infralabials dirty white; two dark postorbital stripes on each side; chin and gular scales grey; ventral surface uniformly dirty white colour with some scales on thigh, tail base and arms with dark brown margins.
The specific epithet is an eponym Latinised (lokugei) in the masculine genitive singular, honouring Mr. Ajith Nethkelum Lokuge, a pioneer ecologist, analogue forestry specialist and a senior member of Young Zoologist’s Association of Sri Lanka, for his significant contribution towards environmental conservation and research in Sri Lanka.
The specimens of the type series were collected from the two locations, Haputale and Idalgashinna (Badulla District, Uva Province), which are situated in the central highlands of Sri Lanka (central intermediate bioclimatic zone [annual rainfall between 2000-2500 mm (
Application of the IUCN Red List Criteria indicates that C. lokugei sp. nov. is Critically Endangered (CR) due to its having an area of occupancy (AOO) < 10 km2 (3.84 km2 in total assuming a 100 m radius around the seven georeferenced locations), severely fragmented habitat and a projected decline in the area, extent and the quality of habitat [Applicable criteria B2ab (iii)].
Morphologically, Cnemaspis lokugei sp. nov. most closely resembles C. butewai, C. ingerorum, C. kivulegedarai, C. kallima, C. kandiana, C. kotagamai, C. menikay and C. retigalensis because of the presence of a dorsum with heterogeneous scales and smooth belly scales (see the species comparison and Table
Comparison of morphological and morphometric characters of C. lokugei sp. nov. with the other congenors of the C. kandiana clade in Sri Lanka.
Species | Maximum SVL (mm) | Dorsal scales | Pectoral scales | Abdomen scales | Subcaudals | Suprababials | Infralabials | Ventrals | Belly scales | Mid-body scales | Paravertebrals | Flank spines | Pre-anal pores | Femoral pores | Lamellae on 4th finger | Lamellae on 4th toe |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
C. pava | 32.4 | HET | KD | KD | Sml | 7–8 | 6–7 | 139–145 | 22–25 | 64–75 | 83–98 | 9–11 | 2–4 | 4–5 | 16–17 | 18–19 |
C. pulchra | 34.2 | HET | KD | KD | Sml | 7–8 | 7–8 | 120–135 | 24–27 | 67–73 | 94–103 | 5–7 | 3–4 | 4–6 | 15–17 | 17–20 |
C. samanalensis | 37.5 | HET | KD | KD | Sml | 8–10 | 8–9 | 128–144 | 19–20 | 61–67 | 64–72 | 5–6 | 3–4 | 3–5 | 16–17 | 18–20 |
C. silvula | 28.6 | HET | KD | KD | Sml | 7–8 | 7–8 | 132–139 | 19–21 | 73–81 | 102–113 | 10–15 | 3–4 | 4–5 | 15–16 | 18–19 |
C. tropidogaster | 31.7 | HET | KD | KD | Sml | 7–8 | 7–8 | 132–146 | 21–25 | 92–98 | 99–106 | 5–7 | 3–4 | 4–5 | 16–17 | 18–19 |
C. upendrai | 35.2 | HET | KD | KD | Sml | 7–8 | 7–8 | 112–128 | 16–25 | 69–74 | 97–102 | 13–15 | 2–3 | 4–5 | 17–18 | 17–21 |
C. ingerorum | 26.9 | HET | SM | SM | Sml | 7–8 | 7–8 | 88–95 | 17–21 | 62–69 | 93–101 | 7–8 | 2–3 | 4–5 | 13–16 | 17–18 |
C. kivulegedarai | 31.2 | HET | SM | SM | Sml | 7–8 | 6–7 | 109–114 | 17–19 | 69–76 | 131–133 | 4–5 | 2–3 | 4–5 | 13–15 | 14–16 |
C. kallima | 35.1 | HET | SM | SM | Sml | 7–8 | 7–8 | 131–138 | 19–23 | 67–74 | 99–107 | 12–15 | 3–4 | 4–5 | 16–18 | 18–20 |
C. kotagamai | 29.8 | HET | SM | SM | Sml | 7–8 | 7–8 | 131–137 | 21–22 | 79–84 | 114–119 | 6–7 | 1 | 4–5 | 13–15 | 17–18 |
C. lokugei sp. nov. | 32.9 | HET | SM | SM | Sml | 7–8 | 7–8 | 143–159 | 15–17 | 95–103 | 122–132 | 5–6 | 3 | 4–5 | 15–16 | 17–18 |
C. butewai | 31.8 | HET | SM | SM | Sml | 7–8 | 7–8 | 125–128 | 23–25 | 92–98 | 134–138 | 5–6 | 3–5 | 4–5 | 15–17 | 17–18 |
C. kandiana | 34.6 | HET | SM | SM | Sml | 8–9 | 7–8 | 119–138 | 19–20 | 68–75 | 86–99 | 5–7 | 2–4 | 3–4 | 12–14 | 18–20 |
C. menikay | 28.0 | HET | SM | SM | Sml | 7–9 | 7–8 | 124–138 | 20–26 | 71–79 | 83–98 | 13–15 | 1–2 | 3–4 | 14–15 | 15–17 |
C. retigalensis | 30.8 | HET | SM | SM | Sml | 7–8 | 7–8 | 121–128 | 16–20 | 69–77 | 82–86 | 4–5 | 1 | 3–4 | 14–15 | 16–20 |
C. amith | 33.0 | HOM | SM | SM | Sml | 7–8 | 7–8 | 123–131 | 19–21 | 67–74 | 79–84 | 4–5 | 3 | 3 | 16–17 | 18–19 |
C. dissanayakai | 29.4 | HOM | SM | SM | Sml | 7–8 | 7–8 | 118–120 | 17–19 | 94–98 | 105–107 | 6–7 | 2–3 | 4–5 | 21–22 | 21–22 |
C. gotaimbarai | 33.7 | HOM | SM | SM | Sml | 7–8 | 8–9 | 129–138 | 23–25 | 72–79 | 117–121 | 5–6 | 2–4 | 3–4 | 16–17 | 19–20 |
C. kawminiae | 35.6 | HOM | SM | SM | Sml | 7–8 | 7–8 | 107–114 | 17–21 | 76–78 | 86–92 | 7–8 | 2–3 | 3–4 | 14–15 | 15–16 |
C. kumarasinghei | 31.6 | HOM | SM | SM | Sml | 7–8 | 7–8 | 120–134 | 17–21 | 87–94 | 61–68 | 7–9 | 2–3 | 3–5 | 15–16 | 16–18 |
C. latha | 30.4 | HOM | SM | SM | Sml | 7–8 | 7–8 | 109–115 | 13–15 | 69–73 | 72–79 | 5–7 | 2–3 | 4–5 | 15–17 | 17–18 |
C. nandimithrai | 31.7 | HOM | SM | SM | Sml | 5–6 | 6–7 | 108–112 | 25–27 | 87–89 | 95–99 | 3–4 | 2–4 | 2–4 | 12–13 | 19–20 |
Amongst species of the C. podihuna clade sensu
Our present morphological and molecular analyses and previous studies (
We are certain that the species that we have described here is novel and has not been previously described due to the following reasons. According to
Most of the Sri Lankan Cnemaspis are point-endemics with distribution ranges limited to < 10 km2 (i.e. AOO < 10 km2, EOO < 100 km2) and the new species described here corresponds with this general pattern, which has led to categorising most species as critically endangered. This restricted distribution could be a consequence of the narrow ecological niche leading to the limitation of favourable microhabitats. The known localities of the new species, Haputale and Idalgashinna are mountainous forested areas with granite caves. Although these localities are somewhat isolated from human habitations, they are susceptible to some degree of human-induced habitat degradation, including clearing and timber felling, forest fragmentation, granite mining, tea and vegetable cultivation and invasive species. Most Cnemaspis species, like Cnemaspis lokugei sp. nov. described here are restricted to forests in mountains (Fig.
We thank to the Director General, the Research Director, the research committee and the field staff of the Department of Wildlife Conservation of Sri Lanka for granting research permits (WL/3/2/42/18a, b) and assisting us during the field surveys. The Additional Conservator and field staff of the Department of Forest Conservation are acknowledged for issuing research permits (R&E/RES/NFSRCM/2019-04) and the support provided during the field surveys. Further, we are grateful to Nanda Wickramasinghe, Sanuja Kasthuriarachchi, Lankani Somaratne, Chandrika Munasinghe, Tharushi Gamage, Rasika Dasanayake, Thushari Dasanayake, Ravindra Wickramanayake and Pannilage Gunasiri at
Comparative material examined from Sri Lanka
Museum acronyms
DWC Museum of the Department of Wildlife Conservation, Giritale, Sri Lanka
WHT Collection of the Wildlife Heritage Trust, Sri Lanka (Now at the
Cnemaspis alwisi
:
C. anslemi
:
C. amith
:
C. butewai
:
C. dissanayakai
C. gemunu
: AMB 7495 (holotype), AMB 7507 (paratype??), WHT 7221, WHT 7347, WHT 7348,
C. godagedarai
:
C. gotaimbarai
:
C. hitihamii
:
C. ingerorum : WHT 7332 (holotype), WHT 7330 (paratype) WHT 7331 (paratype).
C. kallima : WHT 7245 (holotype), WHT 7222 (paratype), WHT 7227 (paratype), WHT 7228 (paratype), WHT 7229 (paratype), WHT 7230(paratype), WHT 7239 (paratype), WHT 7249 (paratype), WHT 7251 (paratype), WHT 7252 (paratype), WHT 7253 (paratype), WHT 7254 (paratype), WHT 7255 (paratype).
C. kandambyi : WHT 9466 (holotype), WHT 9467 (paratype).
C. kandiana
:
C. kawminiae
C. kivulegedarai
:
C. kohukumburai
:
C. kotagamai
C. kumarasinghei
:
C. latha : WHT 7214 (holotype).
C. manoae
:
C. menikay : WHT 7219 (holotype), WHT 7218 (paratype), WHT 7349 (paratype).
C. molligodai
:
C. nandimithrai
:
C. nilgala
:
C. pava : WHT 7286 (holotype), WHT 7281 (paratype), WHT 7282 (paratype), WHT 7283 (paratype), WHT 7285 (paratype), WHT 7288 (paratype), WHT 7289 (paratype), WHT 7290 (paratype), WHT 7291 (paratype), WHT 7292 (paratype), WHT 7293 (paratype), WHT 7294 (paratype), WHT 7295 (paratype), WHT 7296 (paratype), WHT 7297 (paratype), WHT 7298 (paratype), WHT 7299 (paratype), WHT 7300 (paratype), WHT 7301 (paratype), WHT 7302 (paratype).
C. phillipsi : WHT 7248 (holotype), WHT 7236 (paratype); WHT 7237 (paratype); WHT 7238 (paratype).
C. podihuna
:
C. pulchra : WHT 7023 (holotype), WHT 1573a (paratype), WHT 7011 (paratype), WHT 7021 (paratype), WHT 7022 (paratype).
C. punctata : WHT 7256 (holotype), WHT 7223 (paratype), WHT 7226 (paratype), WHT 7243 (paratype), WHT 7244 (paratype).
C. rajakarunai
:
C. rammalensis
:
C. retigalensis
:
C. samanalensis
:
C. scalpensis
:
C. silvula : WHT 7208 (holotype), WHT 7206 (paratype), WHT 7207 (paratype), WHT 7209 (paratype), WHT 7210 (paratype), WHT 7216 (paratype), WHT 7217 (paratype), WHT 7018, WHT 7027, WHT 7202, WHT 7203, WHT 7220, WHT 7354, WHT 7333.
C. tropidogater
:
C. upendrai : WHT 7189 (holotype), WHT 7184 (paratype), WHT 7187 (paratype), WHT 7188 (paratype), WHT 7181 (paratype), WHT 7182 (paratype), WHT 7183 (paratype), WHT 7185 (paratype), WHT 7190 (paratype), WHT 7191 (paratype), WHT 7192 (paratype), WHT 7193 (paratype), WHT 7194 (paratype), WHT 7195 (paratype), WHT 7196 (paratype), WHT 7197 (paratype), WHT 7260 (paratype).
Specimens, voucher numbers and GenBank accession numbers of the taxa used for the DNA-based species delimitation in this study.
Species | Field No./ Museum Voucher No. | GenBank Accession No. | Source |
---|---|---|---|
Calodactylodes illingworthorum | AMB7415 | JX041318 | Gamble et al. 2012 |
Cnemaspis agarwali | AK107 | MK792466 | Khandekar et al. 2019 |
AK108 | MK792467 | Khandekar et al. 2019 | |
Cnemaspis ajijae | AK429 | MK792498 | Khandekar et al. 2019 |
AK432 | MK792499 | Khandekar et al. 2019 | |
Cnemaspis alwisi | AMB7447 | KY037997 |
|
Cnemaspis butewai | SSK1.0/ |
MK562351 |
|
SSK1.1/ |
MK562352 |
|
|
SSK1.2/ |
MK562353 |
|
|
Cnemaspis cf. flaviventralis | AK518 | MK792496 | Khandekar et al. 2019 |
AK517 | MK792497 | Khandekar et al. 2019 | |
Cnemaspis cf. gracilis | AK213 | MK792464 | Khandekar et al. 2019 |
Cnemaspis cf. kumarasinghei | AA13/ |
KY037975 |
|
Cnemaspis cf. mahabali | AK398 | MK792492 | Khandekar et al. 2019 |
AK389 | MK792493 | Khandekar et al. 2019 | |
Cnemaspis cf. gemunu | AMB7507/ |
KY038000 |
|
Cnemaspis cf. podihuna | AMB7449/ |
KY038006 |
|
Cnemaspis lokugei sp. nov. | AA87/ |
KY037993 |
|
AA87B/ |
KY037994 |
|
|
SK5/ |
MW594290 | This study | |
Cnemaspis gemunu | SSK22.0/ ADS217/ |
MK562340 |
|
SSK22.1/ ADS216/ |
MK562341 |
|
|
SSK22.2/ ADS218/ |
MK562342 |
|
|
Cnemaspis girii | AK439 | MK792491 | Khandekar et al. 2019 |
Cnemaspis goaensis | VG385 | MK792475 | Khandekar et al. 2019 |
VG399 | MK792478 | Khandekar et al. 2019 | |
Cnemaspis gotaimbarai | SSK6.0/ |
MK562364 |
|
Cnemaspis gracilis | CES G385 | MK792465 | Khandekar et al. 2019 |
AK135 | MK792470 | Khandekar et al. 2019 | |
Cnemaspis hitihamii | SSK3.0/ |
MK562337 |
|
SSK3.1/ |
MK562338 |
|
|
WHT591/ |
KY038012 |
|
|
SSK3.2/ |
MK562339 |
|
|
Cnemaspis ingerorum | WHT7331 | KY037990 |
|
Cnemaspis kallima | AA82/ |
KY037970 |
|
Cnemaspis kandiana | AA57/ |
KY037971 |
|
AMB7487/ |
KY037972 |
|
|
AA01/ |
KY037973 |
|
|
SSK18.0/ |
MK562347 |
|
|
Cnemaspis kivulegedarai | SSK4.0/ |
MK562348 |
|
SSK4.1/ |
MK562349 |
|
|
SSK4.2/ |
MK562350 |
|
|
Cnemaspis kohukumburai | SSK23.0/ |
MK562336 |
|
Cnemaspis kumarasinghei | AMB7431/ |
KY037974 |
|
SSK15.0/ |
MK562358 |
|
|
SSK15.1/ |
MK562359 |
|
|
SSK15.2/ |
MK562357 |
|
|
SSK2.0/ |
MK562360 |
|
|
SSK2.1/ |
MK562361 |
|
|
AA13/ |
KY037975 |
|
|
Cnemaspis latha | WHT214/ |
KY037976 |
|
Cnemaspis limayei | AK DAJ | MK792485 | Khandekar et al. 2019 |
DV40.5 | MK792486 | Khandekar et al. 2019 | |
Cnemaspis modiglianii | MVZ239314 | KY037977 |
|
MVZ239315 | KY037978 |
|
|
Cnemaspis mysoriensis | NA | MK792474 | Khandekar et al. 2019 |
Cnemaspis nandimithrai | SSK16.0/ |
MK562362 |
|
SSK16.1/ |
MK562363 |
|
|
Cnemaspis nilgala | AMB7418/ |
KY038009 |
|
AMB7436/ |
KY038010 |
|
|
Cnemaspis pava | WHT7261/ |
KY037979 |
|
AMB7494/ |
KY037980 |
|
|
AA19/ |
KY037981 |
|
|
SSK24.1/ ADS214/ |
MK562346 |
|
|
Cnemaspis phillipsi | AA81/ |
KY038001 |
|
SSK17.0/ ADS220/ |
MK562343 |
|
|
Cnemaspis podihuna | 70A/ |
KY038002 |
|
AMB7449/ |
JX041328 | Gamble et al. 2012 | |
58A/ |
KY038005 |
|
|
WHT7334/ |
KY038004 |
|
|
Cnemaspis pulchra | SSK9.0/ ADS205 | MK562354 |
|
SSK9.1/ ADS206 | MK562355 |
|
|
SSK9.2/ ADS207 | MK562356 |
|
|
AA80/ |
KY038007 |
|
|
Cnemaspis rajakarunai | SSK004 | MW594285 | This study |
SSK005 | MW594286 | This study | |
SSK006 | MW594287 | This study | |
Cnemaspis rammalensis | SSK027 | MW594288 | This study |
SSK029 | MW594289 | This study | |
Cnemaspis retigalensis | AMB7448/ |
KY037982 |
|
Cnemaspis samanalensis | AMB7505/ |
KY037983 |
|
Cnemaspis scalpensis | SSK25.0/ ADS219 | MK562344 |
|
WHT7268/ |
KY038008 |
|
|
Cnemaspis shevaroyensis | AK204 | MK792468 | Khandekar et al. 2019 |
AK205 | MK792469 | Khandekar et al. 2019 | |
Cnemaspis silvula | AA88/ |
KY037984 |
|
Cnemaspis sp. 1 (Sri Lanka) | AA17/ |
KY037989 |
|
Cnemaspis sp. 3 (Sri Lanka) | AMB7508/ |
KY037991 |
|
Cnemaspis sp. 4 (Sri Lanka) | AMB7529/ |
KY037992 |
|
Cnemaspis sp. 6 (India) | SB048 | KY037995 |
|
Cnemaspis sp. 7 (India) | JB239 | KY037996 |
|
Cnemaspis sp. 9 (Sri Lanka) | 47A/ |
KY038011 |
|
Cnemaspis sp. 11 (India) | SB151 | KY038013 |
|
Cnemaspis sp. (India) | G349 | MK792490 | Khandekar et al. 2019 |
Cnemaspis sp. (India) | VG407 | MK792487 | Khandekar et al. 2019 |
Cnemaspis sp. (India) | VG408 | MK792488 | Khandekar et al. 2019 |
Cnemaspis sp. (India) | AK470 | MK792489 | Khandekar et al. 2019 |
Cnemaspis thackerayi | CES G143 | MK792471 | Khandekar et al. 2019 |
Cnemaspis upendrai | AA83 | KY037986 |
|
AA12 | KY037987 |
|
|
AMB7488 | KY037988 |
|
|
SSK24.0/ ADS213 | MK562345 |
|
|
Cnemaspis yercaudensis | AK280 | MK792472 | Khandekar et al. 2019 |
G133 | MK792473 | Khandekar et al. 2019 |