Research Article |
Corresponding author: Angelica Crottini ( tiliquait@yahoo.it ) Academic editor: Johannes Penner
© 2018 Adriana Bellati, Mark D. Scherz, Steven Megson, Sam Hyde Roberts, Franco Andreone, Gonçalo M. Rosa, Jean Noël, Jasmin E. Randrianirina, Mauro Fasola, Frank Glaw, Angelica Crottini.
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Citation:
Bellati A, Scherz MD, Megson S, Hyde Roberts S, Andreone F, Rosa GM, Noël J, Randrianirina JE, Fasola M, Glaw F, Crottini A (2018) Resurrection and re-description of Plethodontohyla laevis (Boettger, 1913) and transfer of Rhombophryne alluaudi (Mocquard, 1901) to the genus Plethodontohyla (Amphibia, Microhylidae, Cophylinae). Zoosystematics and Evolution 94(1): 109-135. https://doi.org/10.3897/zse.94.14698
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The systematics of the cophyline microhylid frog genera Plethodontohyla and Rhombophryne have long been intertwined, and their relationships have only recently started to become clear. While Rhombophryne has received a lot of recent taxonomic attention, Plethodontohyla has been largely neglected. Our study is a showcase of just how complex the taxonomic situation between these two genera is, and the care that must be taken to resolve taxonomic conundrums where old material, multiple genus transitions, and misattribution of new material obfuscate the picture. We assessed the identity of the historic names Dyscophus alluaudi (currently in the genus Rhombophryne), Phrynocara laeve and Plethodontohyla laevis tsianovohensis (both synonyms of Rhombophryne alluaudi) based on an integrative taxonomic approach harnessing genetics, external morphology, osteological data obtained via micro-Computed Tomography (micro-CT) and bioacoustics. We show that (1) the holotype of Dyscophus alluaudi is a member of the genus Plethodontohyla; (2) the Rhombophryne specimens from central Madagascar currently assigned to Rhombophryne alluaudi have no affinity with that species, and are instead an undescribed species; and (3) Phrynocara laeve and Dyscophus alluaudi are not synonymous, but represent closely related species, whereas Plethodontohyla laevis tsianovohensis is tentatively confirmed as synonym of D. alluaudi. We resurrect and re-describe Plethodontohyla laevis, and re-allocate and re-describe Plethodontohyla alluaudi on the basis of new and historic material.
Amphibia , Anura , Phrynocara laeve , Plethodontohyla alluaudi , Madagascar, Integrative taxonomy
The microhylid subfamily Cophylinae Cope, 1889, endemic to Madagascar, is today recognised as possessing eight genera according to
Plethodontohyla in its most updated definition (
Plethodontohyla was originally erected by
The taxon Dyscophus alluaudi Mocquard, 1901 was originally described with the type locality ‘Fort Dauphin’ (or Tolagnaro; Fig.
Recently, individuals of a species of terrestrial cophyline microhylid were found in Betampona Special Reserve (Fig.
In this study, we examined these specimens from Betampona, and found them to have strong affinities with the holotype of Phrynocara laeve. This suggested that at least Phrynocara laeve was incorrectly attributed to the genus Rhombophryne, and prompted questions regarding the genus-level assignment of Dyscophus alluaudi. To resolve these questions, we investigated the morphology and osteology of the type material of Dyscophus alluaudi, Phrynocara laeve, and Plethodontohyla laevis tsianovohensis (Fig.
In anticipation of the main outcomes of our research, we hereafter use Plethodontohyla laevis and P. alluaudi in reference to these two names, except when discussing the type material, where we refer to the species by their original names (Phrynocara laeve and Dyscophus alluaudi, respectively).
New specimens were collected either during the day by searching the leaf litter, or at night using torches and headlamps, sometimes guided by the male advertisement call. Representative voucher specimens were euthanized, and then fixed in 90% ethanol or 10% buffered formalin, rinsed in water and preserved in 70% ethanol. Live colouration was photographed at the time of capture.
Locality information were recorded using a GPS, datum WGS84. Field numbers FAZC, ACZC and ACZCV, FGZC, and PBZT-RJS refer to F. Andreone, A. Crottini, F. Glaw, and J.E. Randrianirina, respectively. Tissue samples (taken before specimen fixation) were obtained from hindlimb muscle or tongue, and preserved separately in 99% ethanol.
Institutional abbreviations used herein are as follows:
Measurements of preserved specimens were taken by MDS with a calliper to the nearest 0.01 mm, rounded to the nearest 0.1 mm (ratios calculated before rounding to avoid compound rounding errors): SVL (snout-vent length), HW (maximum head width), HL (head length, from the rictus to the snout tip), ED (horizontal eye diameter), END (eye-nostril distance), NSD (nostril-snout tip distance), NND (internarial distance), TD (horizontal tympanum diameter), HAL (hand length, from the radioulnar-carpal articulation to the tip of the longest finger), FORL (forelimb length, given by the sum of HAL, lower arm length [LAL] and upper arm length [UAL]), FOL (foot length, from the tarsal-metatarsal articulations to the tip of the longest toe), TARL (tarsus length), FOTL (foot length including tarsus, given by the sum of FOL and TARL), TIBL (tibia length), HIL (hind-limb length, given by the sum of FOL, TARL, TIBL and thigh length [THIL]), IMCL (maximum length of inner metacarpal tubercle). Examined specimens are listed in Table
Morphological measurements of the holotypes of Phrynocara laeve, Dyscophus alluaudi, Plethodontohyla laevis tsianovohensis and of the recently collected specimens assigned to P. laevis, P. alluaudi, P. sp. Ca01, P. brevipes and Rhombophryne sp. analysed for this study (all measurements in millimetres except ratios values). For abbreviations, see the measurements section of the Materials and methods. Abbreviations not included in the text: HT, holotype; F, female; M, male; J, juvenile.
Collection Number | Species | Locality | Status | Sex | SVL | HW | HL | HW/HL | ED | ED/HL | END | NSD | NND | TD | TD/ED | HAL | UAL | LAL | HAL/SVL | FORL | FORL/SVL | TIBL | TIBL/SVL | TARL | FOL | FOTL | HIL | HIL/SVL | IMCL |
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MNHN 1901.235 | Dyscophus alluaudi | Fort Dauphin | HT | F | 47.4 | 19.8 | 10.7 | 1.85 | 3.7 | 0.35 | 2.7 | 2.1 | 4.5 | 1.9 | 0.53 | 10.8 | 4.5 | 6.9 | 0.23 | 22.2 | 0.47 | 16.0 | 0.34 | 8.9 | 16.2 | 25.1 | 59.2 | 1.25 | 2.7 |
MNHN 1936.47 | Plethodontohyla laevis tsianovohensis | Forest of Tsianovoha | HT | F | 58.0 | 26.8 | 15.7 | 1.71 | 4.2 | 0.27 | 3.3 | 3.0 | 5.5 | 2.5 | 0.58 | 16.0 | 4.5 | 10.2 | 0.28 | 30.8 | 0.53 | 22.6 | 0.39 | 12.6 | 25.0 | 37.6 | 85.4 | 1.47 | 3.3 |
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Plethodontohyla alluaudi | Andohahela | _ | 28.8 | 13.2 | 7.9 | 1.67 | 2.8 | 0.36 | 1.9 | 1.6 | 2.8 | 0.9 | 0.33 | 7.6 | 4.1 | 5.1 | 0.26 | 16.8 | 0.58 | 11.1 | 0.39 | 6.1 | 12.2 | 18.4 | 40.5 | 1.41 | 1.5 | |
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Plethodontohyla alluaudi | Andohahela | _ | 29.1 | 14.5 | 8.1 | 1.79 | 2.6 | 0.33 | 2.1 | 1.4 | 3.0 | 1.7 | 0.66 | 7.0 | 3.5 | 5.2 | 0.24 | 15.8 | 0.54 | 10.8 | 0.37 | 6.1 | 12.0 | 18.1 | 41.2 | 1.41 | 1.5 | |
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Phrynocara laeve | Sakana | HT | F | 38.1 | 16.5 | 10.5 | 1.56 | 3.8 | 0.36 | 2.5 | 2.1 | 4.2 | 1.5 | 0.40 | 8.8 | 5.1 | 7.3 | 0.23 | 21.2 | 0.56 | 14.8 | 0.39 | 8.6 | 15.9 | 24.5 | 54.5 | 1.43 | 1.9 |
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Plethodontohyla laevis | Analalava | J | 28.1 | 11.7 | 8.3 | 1.41 | 3.1 | 0.37 | 1.8 | 1.5 | 2.8 | 1.2 | 0.40 | 6.8 | 3.5 | 5.6 | 0.24 | 16.0 | 0.57 | 11.1 | 0.40 | 6.2 | 12.0 | 19.4 | 44.5 | 1.58 | 1.4 | |
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Plethodontohyla laevis | Betampona | F | 41.5 | 17.3 | 10.9 | 1.59 | 3.5 | 0.33 | 2.6 | 1.9 | 4.0 | 1.2 | 0.33 | 9.4 | 5.6 | 7.5 | 0.23 | 22.5 | 0.54 | 15.5 | 0.37 | 8.2 | 11.9 | 19.3 | 51.3 | 1.24 | 2.1 | |
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Plethodontohyla laevis | Marovato | F | 42.2 | 18.6 | 10.8 | 1.72 | 3.9 | 0.36 | 2.9 | 1.9 | 3.9 | 2.0 | 0.52 | 10.3 | 4.6 | 7.6 | 0.25 | 22.5 | 0.53 | 16.4 | 0.39 | 8.8 | 15.9 | 23.3 | 59.2 | 1.40 | 2.0 | |
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Plethodontohyla laevis | Betampona | M | 33.0 | 15.0 | 8.4 | 1.79 | 3.2 | 0.38 | 2.5 | 1.8 | 3.4 | 1.4 | 0.44 | 7.8 | 3.3 | 5.9 | 0.24 | 17.1 | 0.52 | 13.1 | 0.40 | 7.0 | 13.4 | 20.8 | 48.9 | 1.48 | 1.7 | |
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Plethodontohyla laevis | Betampona | F | 40.9 | 16.7 | 10.0 | 1.68 | 4.1 | 0.41 | 3.0 | 2.0 | 3.9 | 1.4 | 0.35 | 8.5 | 5.6 | 6.9 | 0.21 | 21.0 | 0.51 | 15.4 | 0.38 | 8.4 | 14.9 | 22.3 | 54.3 | 1.33 | 1.7 | |
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Plethodontohyla laevis | Anivorano Est | M | 40.3 | 16.4 | 10.4 | 1.58 | 3.6 | 0.35 | 2.2 | 1.8 | 3.8 | 1.6 | 0.44 | 8.8 | 4.2 | 7.0 | 0.22 | 20.0 | 0.50 | 14.5 | 0.36 | 8.2 | 14.2 | 21.6 | 52.7 | 1.31 | 1.8 | |
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Plethodontohyla laevis | Betampona | M | 36.8 | 15.8 | 9.7 | 1.62 | 3.7 | 0.38 | 2.5 | 1.8 | 3.2 | 1.6 | 0.44 | 7.9 | 4.5 | 7.0 | 0.21 | 19.4 | 0.53 | 13.9 | 0.38 | 8.1 | 13.7 | 21.1 | 52.1 | 1.42 | 2.0 | |
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P. sp. Ca01 | Ranomafana, Imaloka | F | 27.7 | 12.5 | 6.9 | 1.81 | 2.4 | 0.35 | 1.8 | 1.3 | 2.6 | 1.5 | 0.63 | 6.4 | 3.8 | 4.0 | 0.23 | 14.3 | 0.52 | 10.8 | 0.39 | 5.9 | 11.6 | 17.5 | 40.0 | 1.44 | 1.1 | |
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P. sp. Ca01 | Ranomafana, Imaloka | F | 31.9 | 12.9 | 7.6 | 1.70 | 3.0 | 0.40 | 1.8 | 1.3 | 2.6 | 1.6 | 0.55 | 6.5 | 3.6 | 5.2 | 0.21 | 15.3 | 0.48 | 11.8 | 0.37 | 6.4 | 12.3 | 18.7 | 42.1 | 1.32 | 1.4 | |
|
Plethodontohyla brevipes | Ranomafana, National Park | _ | 32.1 | 12.2 | 7.9 | 1.54 | 2.8 | 0.35 | 2.3 | 1.4 | 3.0 | 2.2 | 0.79 | 7.2 | 4.2 | 5.5 | 0.22 | 16.8 | 0.52 | 12.2 | 0.38 | 6.6 | 12.6 | 19.2 | 44.9 | 1.40 | 1.0 | |
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Plethodontohyla brevipes | Ranomafana, Talatakely | _ | 29.9 | 12.4 | 7.2 | 1.71 | 2.6 | 0.36 | 2.3 | 1.4 | 2.7 | 1.9 | 0.72 | 6.8 | 3.7 | 5.1 | 0.23 | 15.7 | 0.53 | 12.2 | 0.41 | 6.9 | 11.8 | 18.7 | 42.7 | 1.43 | 1.3 | |
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Plethodontohyla brevipes | Ranomafana | M | 29.9 | 11.5 | 7.5 | 1.53 | 2.4 | 0.33 | 2.1 | 1.3 | 2.6 | 1.5 | 0.60 | 6.9 | 3.2 | 5.1 | 0.23 | 15.2 | 0.51 | 12.4 | 0.42 | 6.6 | 12.2 | 18.8 | 43.8 | 1.46 | 1.5 | |
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Plethodontohyla brevipes | Ranomafana, Ranomena | _ | 27.5 | 11.1 | 6.9 | 1.60 | 2.8 | 0.41 | 1.9 | 1.4 | 2.7 | 2.1 | 0.74 | 5.7 | 3.4 | 4.9 | 0.21 | 13.9 | 0.51 | 11.3 | 0.41 | 6.3 | 11.4 | 17.7 | 40.3 | 1.47 | 1.1 | |
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Plethodontohyla brevipes | Ranomafana, Imaloka | _ | 32.4 | 13.0 | 8.0 | 1.63 | 2.7 | 0.34 | 2.1 | 1.2 | 2.7 | 1.9 | 0.70 | 7.0 | 4.1 | 4.9 | 0.22 | 16.0 | 0.49 | 12.2 | 0.38 | 6.7 | 12.1 | 18.8 | 43.2 | 1.34 | 1.3 | |
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Plethodontohyla brevipes | Ranomafana | M | 29.6 | 11.9 | 7.1 | 1.66 | 2.4 | 0.34 | 2.0 | 1.3 | 2.6 | 1.7 | 0.72 | 7.1 | 3.4 | 5.6 | 0.24 | 16.1 | 0.54 | 12.5 | 0.42 | 6.8 | 13.4 | 20.2 | 45.6 | 1.54 | 1.4 | |
|
Rhombophryne sp. | Andasibe | _ | 39.9 | 20.1 | 11.9 | 1.70 | 3.4 | 0.29 | 2.6 | 1.9 | 4.0 | 2.6 | 0.75 | 9.3 | 5.1 | 7.3 | 0.23 | 21.7 | 0.54 | 16.2 | 0.41 | 9.2 | 17.8 | 27.0 | 61.0 | 1.53 | 2.0 | |
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Rhombophryne sp. | Andasibe | _ | 36.4 | 17.0 | 10.7 | 1.59 | 3.0 | 0.28 | 2.4 | 3.5 | 1.9 | 0.63 | 7.0 | 4.7 | 5.7 | 0.19 | 17.4 | 0.48 | 14.8 | 0.41 | 8.5 | 15.7 | 24.2 | 55.4 | 1.52 | 1.8 | ||
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Rhombophryne sp. | Andasibe | M | 42.6 | 18.9 | 11.0 | 1.71 | 3.4 | 0.31 | 2.2 | 3.9 | 1.8 | 0.54 | 8.8 | 4.8 | 7.0 | 0.21 | 20.7 | 0.49 | 17.1 | 0.40 | 9.5 | 17.2 | 26.7 | 62.1 | 1.46 | 2.7 |
The holotypes of Phrynocara laeve (
Ten samples of P. laevis from four different localities (Fig.
Individuals of Plethodontohyla laevis in life, illustrating the diversity of colour patterns from different sites of the species known distribution range: (a)
Individuals of (a) Plethodontohyla alluaudi in dorsolateral and (inset) ventral view (
List of samples included for the molecular analyses with their respective localities, voucher and/or field number information, institutional catalogue number (where available) and GenBank accession numbers.
Sample ID | Taxon | Locality | Field number | Institutional catalogue number | Accession nos. 16S | Accession nos. POMC |
---|---|---|---|---|---|---|
ACP1109 | Plethodontohyla laevis | Betampona | – |
|
HM364769/FJ559294 | MG273712 |
ACP1901 | Plethodontohyla laevis | Betampona | ACZCV 0066 |
|
MG273701 | MG273713 |
ACP1108 | Plethodontohyla laevis | Betampona | – |
|
MG273702 | MG273714 |
ACP1107 | Plethodontohyla laevis | Betampona | – |
|
MG273703 | – |
ACP2196 | Plethodontohyla laevis | Betampona | ACZC 6262 | – | MG273704 | MG273715 |
ACP2214 | Plethodontohyla laevis | Betampona | ACZCV 0268 | – | MG273705 | MG273716 |
ACP2066 | Plethodontohyla laevis | Betampona | ACZC 5923 | – | MG273706 | MG273717 |
ACP1362 | Plethodontohyla laevis | Marovato | PBZT-RJS 2020 |
|
MG273707 | MG273718 |
ACP3171 | Plethodontohyla laevis | Analalava | FGZC 5239 |
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MG273708 | – |
ACP1368 | Plethodontohyla laevis | Anivorano Est | PBZT-RJS 1830 |
|
MG273709 | MG273719 |
FGZC161 | Plethodontohyla alluaudi | Andohahela | FGZC 161 |
|
EU341068 | MG273720 |
ACP1056 | Plethodontohyla alluaudi | Tsitongambarika (Anosyenne Chain) | FAZC 15423 | – | MG273710 | MG273721 |
SE47 | Plethodontohyla alluaudi | Sainte Luce | – | – | MG273711 | – |
ZCMV555 | Plethodontohyla sp. Ca01 | Ambatolahy | ZCMV 555 | – | EU341067 | MG273722 |
ZCMV968 | Rhombophryne sp. | Torotorofotsy | ZCMV 968 | – | EU341105 | MG273723 |
na | Rhombophryne sp. | Tsararano | – |
|
AY594105 | – |
na | Rhombophryne sp. | Andasibe | – |
|
AY594112 | – |
na | Plethodontohyla ocellata | Ambohitsara | ZCMV 88 | UADBA uncatalogued | EU341062 | – |
na | Plethodontohyla brevipes | Maharira | ZCMV 270 | – | EU341063 | – |
na | Plethodontohyla fonetana | Bemaraha | FGZC 917 |
|
EU341058 | – |
na | Plethodontohyla guentheri | Marojejy | FGZC 2814 |
|
EU341059 | – |
na | Plethodontohyla inguinalis | Vohiparara | – |
|
EU341057 | – |
na | Plethodontohyla mihanika | Ranomafana | ZCMV 308 | UADBA uncatalogued | EU341056 | – |
na | Plethodontohyla notosticta | Nosy Mangabe | ZCMV 2106 | – | EU341061 | – |
na | Plethodontohyla notosticta | Manombo | ZCMV 471 | – | EU341060 | – |
na | Plethodontohyla bipunctata | Tolagnaro | RAX 10726 | – | KM509181 | – |
na | Plethodontohyla tuberata | Manjakatompo | – |
|
EU341064 | – |
na | Rhombophryne testudo | Nosy Be, Lokobe | – |
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KC180070 | – |
na | Scaphiophryne marmorata | Andasibe | – |
|
AY834191 | – |
For the newly obtained samples, total genomic DNA was extracted using Proteinase K (10 mg/ml) digestion followed by a standard salt-extraction protocol (
Sequences were compared with GenBank sequences, and chromatographs were visually checked and edited, when necessary, using BIOEDIT 7.0.5.3 (
Bayesian analyses were conducted in MRBAYES 3.2.2 (
a) Bayesian inference tree based on 529 bp of the mitochondrial 16S. Asterisks denote Bayesian posterior probabilities values: one asterisk enclosed in parentheses, ≥ 90%; one asterisk, ≥ 98%; two asterisks, ≥ 99–100%. b) Haplotype network reconstruction for the phased alleles of the nuclear POMC gene fragment in P. laevis from Betampona, Marovato and Anivorano Est, P. alluaudi from Tsitongambarika and Andohahela, P. sp. Ca01 from Ambatolahy and Rhombophryne sp. from Torotorofotsy.
Alternative alleles of the analysed POMC gene fragment were inferred using the PHASE algorithm (
Vocalizations of P. laevis were recorded in the field with a Marantz PMD 660 digital recorder, accessorized with a semi-directional microphone. Calls were successively analysed with the acoustic software ADOBE AUDITION 3.0. Definition of variables and terminology in call descriptions follow
Comparative measurements from advertisement calls of Plethodontohyla species.
Species | Temp. (°C) | Series of notes | Note duration (ms) | Duration of inter-note intervals (s) | Note repetition rate (n/s) | Dominant frequency (Hz) | Visible harmonics | Reference |
P. laevis | 21 | 1 | 391–422 | 47 (n=1) | 0.04 | 1820–2530 | 11 | this study |
(407±12.7, n=4) | ||||||||
P. alluaudi * | 24 | 1 | 320–560 | unknown | unknown | 1400–2100 | 0 | this study |
(478±109, n=4) | ||||||||
P. inguinalis | 21 | 1 | 133–191 | 0.85–1.15 | 0.9 | 800–1300 | 1 |
|
(148±18, n=10) | (1±0.085, n=10) | |||||||
P. mihanika | 24.5 | 1 | 150–172 | 4–7.2 | 0.18 | 1900–2200 | 4 |
|
(159±6, n=12) | (5.3±1, n=11) | |||||||
P. notosticta | unknown | 1 | 280–340 | 2 | 0.43 | 1000 | unknown |
|
19 | 1 | 365–412 | 3.9–5.4 | 0.26 | 930–1330 | 9 |
|
|
(391±13.3, n=15) | (3.7±0.74, n=14) |
Temporal measurements are provided as range, followed by mean, standard deviation and number of analysed units (n). We measured air temperature (to the nearest 1 °C) with digital devices at close distance to calling frogs (i.e. temperature information refers to air temperature at the time of recording, not body temperature of the calling specimen). The number of recordings did not allow for temperature corrections.
We here present evidence that (1) Dyscophus alluaudi and Phrynocara laeve are both members of the genus Plethodontohyla; (2) Plethodontohyla laevis tsianovohensis is more similar to D. alluaudi than Ph. laevis; (3) the osteology and morphology of the holotypes of Dyscophus alluaudi and Phrynocara laeve indicate that they are not conspecific; (4) the species of Rhombophryne currently called R. ‘alluaudi’ from the Andasibe region has no affinity with that species; (5) populations of P. sp. Ca3 from Betampona are conspecific with Phrynocara laeve; and (6) populations of a species of Plethodontohyla from southern Madagascar, until now referred to as ‘P. bipunctata’ (
We examined the type material of Dyscophus alluaudi, which is currently assigned to the genus Rhombophryne, and its junior synonyms Phrynocara laeve and Plethodontohyla laevis tsianovohensis (depicted in Fig.
(1) The holotype of Dyscophus alluaudi, MNHN 1901.235 (Fig.
(2) The holotype of Phrynocara laeve,
(3) The type specimen of Plethodontohyla laevis tsianovohensis, MNHN 1936.47 (Fig.
As a next step, we analysed the osteology and morphology of three more recently collected specimens: (1)
(1)
(2)
(3)
Fig.
We note that the specimen representing P. sp. Ca01 (ZCMV 555) from Ambatolahy in eastern Madagascar (21°14’37.92”S, 047°25’34.38”E) is genetically very similar to the samples attributed to P. alluaudi and phylogenetically represents the sister taxon of the specimens here attributed to P. alluaudi. A picture of a specimen of P. sp. Ca01, ZCMV 555 (or 556, a second not yet sequenced individual) was depicted as Plethodontohyla brevipes on page 125 of
Among representatives of the genus Plethodontohyla, the mean uncorrected p-distance (for the 16S fragment) of P. laevis varies between 5.5% (comparison with P. sp. Ca01 which may be conspecific with P. alluaudi) and 11.5% (comparison with P. guentheri and with P. brevipes). Our data also reveal some genetic differentiation between the four known populations of P. laevis, with an intraspecific mean uncorrected p-distance of 1.1% (Table
The two Bayesian analyses resulted in largely identical trees, with only minor changes in posterior probability values, and showed that P. laevis from the four analysed localities forms a robust monophyletic group (posterior probability [PP] 0.99). Our analyses recovered a moderately supported sister relationship (PP 0.94) for P. laevis and the clade composed of P. alluaudi in its new definition and P. sp. Ca01 from Ambatolahy (Fig.
The haplotype network reconstruction of the nuclear POMC gene (Fig.
The analysis of haplotype network reconstruction fails to recover a single statistically significant haplotype network for the analysed dataset that comprises representative samples of P. laevis from three localities, P. alluaudi from two localities, P. sp. Ca01 and the Rhombophryne species from Torotorofotsy, and a minimum of 18 substitutions are required to join these two haplotype networks (see Fig.
Estimates of evolutionary divergence over sequence pairs within- (bold) and between-species for the analysed 16S rRNA mitochondrial gene fragment. The number of base differences per site averaged over all sequence pairs within and between groups are shown. The analysis involved 28 nucleotide sequences. All positions containing gaps and missing data were eliminated. There were a total of 300 positions in the final dataset. Evolutionary analyses were conducted in MEGA7 (
P. alluaudi | P. sp. Ca01 | P. laevis | R. sp. | P. ocellata | P. brevipes | P. fonetana | P. guentheri | P. inguinalis | P. mihanika | P. notosticta | P. bipunctata | P. tuberata | R. testudo | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P. alluaudi | 0.7% | |||||||||||||
P. sp. Ca01 | 2.9% | n/c | ||||||||||||
P. laevis | 5.8% | 5.5% | 1.1% | |||||||||||
R. sp. | 12.4% | 12.1% | 12.6% | 0.7% | ||||||||||
P. ocellata | 9.0% | 9.3% | 9.9% | 9.4% | n/c | |||||||||
P. brevipes | 10.4% | 10.7% | 11.5% | 9.4% | 5.0% | n/c | ||||||||
P. fonetana | 10.4% | 10.0% | 9.9% | 9.0% | 9.3% | 11.3% | n/c | |||||||
P. guentheri | 11.1% | 10.0% | 11.5% | 10.3% | 11.0% | 11.7% | 7.7% | n/c | ||||||
P. inguinalis | 9.9% | 9.3% | 9.6% | 8.1% | 7.0% | 8.7% | 7.3% | 8.3% | n/c | |||||
P. mihanika | 9.3% | 8.3% | 7.0% | 10.4% | 9.7% | 11.7% | 7.7% | 10.7% | 9.0% | n/c | ||||
P. notosticta | 11.6% | 10.8% | 10.4% | 10.6% | 10.5% | 10.5% | 9.8% | 10.3% | 9.5% | 9.7% | 0.6% | |||
P. bipunctata | 9.4% | 9.3% | 9.5% | 9.8% | 2.3% | 3.70% | 9.7% | 10.7% | 6.7% | 10.0% | 9.5% | n/c | ||
P. tuberata | 5.6% | 5.7% | 7.2% | 10.8% | 8.7% | 10.0% | 9.7% | 10.0% | 8.7% | 8.3% | 10.7% | 9.0% | n/c | |
R. testudo | 12.8% | 14.0% | 14.2% | 8.6% | 11.3% | 11.70% | 13.0% | 13.0% | 9.3% | 12.3% | 12.3% | 10.3% | 11.3% | n/c |
This species has been referred to as Plethodontohyla sp. 3 ‘Betampona’ by
As we have shown above, several osteological and morphological characters exist to distinguish the holotypes of Dyscophus alluaudi and Phrynocara laeve. Osteological characters suggest that both taxa are members of the genus Plethodontohyla. Specimens recently collected in Betampona Special Reserve closely match the morphology, osteology and appearance of the holotype of Phrynocara laeve. A village named Sakana (in the Vavatenina commune, Toamasina Province) was located by using Google Earth roughly 70 km North of Betampona (17°18’00.00”S, 049°01’59.99”E), and we suspect that this may have been the forest to which Boettger was referring in the original description (
Adult male (ethanol-fixed, DNA sequenced and included in
(see also Tables
Morphological variation in the analysed specimens of Plethodontohyla spp. Abbreviations not identified in the text: TT, Toe Tips (1, not enlarged, 2, enlarged); FT, Finger Tips (1, not enlarged, 2, enlarged); TP, Terminal Phalanges (K, knob-shaped, T, T-shaped, Y, Y-shaped); DDL, Dorsolateral Line, a narrow white dorsolateral line delimiting a sharp difference between the dorsal colouration and the uniformly dark flanks, extending from the tip of the snout backward until the inguinal region (+, presence, - absence, (+), not always present); Sk, Skin (1, smooth, 2, granular, 3, with tubercles); RID, Ridge, supratympanic dermal fold (+, presence, - absence); X, bold ‘X’ marking on the head between the eye bordered by a thin while line (+, presence, - absence); DDF, Dorsal Dermal Folds, two symmetrical and concave thin dorsal folds (+, presence, - absence); TTA, Tibiotarsal Articulation (1, reaching the tympanum, 2, reaching the insertion of the arms, 3, reaching the eye, 4, extending beyond the eye, * at least); ST, Snout tip (1, rounded, 2, pointed).
ID code | Genus | Species | Locality | Sex | Status | TT | FT | TP | DLL | SK | RID | X | DDF | TTA | ST |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Phrynocara | laeve | Sakana | F | HT | 1 | 1 | K | – | 1 | + | + | – | n/a | 1 |
|
Plethodontohyla | laevis | Betampona | F | – | 1 | 1 | K | – | 1 | + | + | – | 1* | 1 |
|
Plethodontohyla | laevis | Betampona | F | – | 1 | 1 | K | – | 1 | + | + | – | 1* | 1 |
|
Plethodontohyla | laevis | Betampona | M | – | 1 | 1 | K | – | 1 | + | + | – | 1* | 1 |
|
Plethodontohyla | laevis | Betampona | M | – | 1 | 1 | K | – | 1 | + | + | – | 1* | 1 |
|
Plethodontohyla | laevis | Marovato | F | – | 1 | 1 | K | – | 1 | + | + | – | 3 | 1 |
|
Plethodontohyla | laevis | Anivorano Est | M | – | 1 | 1 | K | – | 1 | + | + | – | 1* | 1 |
MNHN 1901.235 | Dyscophus | alluaudi | Fort Dauphin | F | HT | 1 | 1 | K | – | 1 | + | + | – | 2 | 1 |
MNHN 1936.47 | Plethodontohyla | laevis tsianovohensis | Tsianovoha | F | HT | 1 | 1 | K | – | 1 | + | + | – | n/a | 1 |
|
Plethodontohyla | alluaudi | Andohahela | – | – | 1 | 1 | K | – | 1 | + | + | – | 2* | 1 |
FAZC 15423 | Plethodontohyla | alluaudi | Tsitongambarika (Anosyenne Chain) | – | – | 1 | 1 | K | – | 1 | + | + | – | n/a | 1 |
|
Plethodontohyla | alluaudi | Andohahela | – | – | 1 | 1 | K | – | 1 | + | + | – | n/a | 1 |
ZCMV 555 | Plethodontohyla | sp. Ca01 | Ambatolahy | – | – | 1 | 1 | n/a | – | n/a | + | + | – | n/a | 1 |
|
Plethodontohyla | sp. Ca01 | Imaloka | – | – | 1 | 1 | K | – | 1 | + | + | – | 1 | 1 |
|
Plethodontohyla | sp. Ca01 | Imaloka | – | – | 1 | 1 | K | – | 1 | + | + | – | 1 | 1 |
|
Plethodontohyla | tuberata | Manjakatompo | – | – | 1 | 1 | K | – | 3 | + | – | – | 2 | 1 |
|
Plethodontohyla | ocellata | Ranomafana | – | – | 1 | 1 | K | – | 2 | + | – | – | 1* | 1 |
ACZCV 0101 | Plethodontohyla | ocellata | Betampona | – | – | 1 | 1 | K | – | 2 | + | – | + | 1* | 1 |
|
Plethodontohyla | bipunctata | Andohahela | – | – | 1 | 1 | K | – | 2 | + | – | + | 2* | 1 |
|
Plethodontohyla | brevipes | Imaloka | – | – | 1 | 1 | K | – | 2 | + | + | + | 2 | 1 |
|
Plethodontohyla | inguinalis | Kalambatritra | – | – | 2 | 2 | T | (+) | 2 | – | – | – | 3* | 1 |
|
Plethodontohyla | notosticta | Sahavontsira | – | – | 2 | 2 | T | + | 1 | – | – | – | 3 | 2 |
|
Plethodontohyla | guentheri | Marojejy | F | HT | 2 | 2 | T | + | 1 | – | – | – | 3 | 2 |
|
Plethodontohyla | fonetana | Tsingy de Bemaraha | F | HT | 2 | 2 | Y | – | 1 | + | – | + | 1 | 1 |
|
Plethodontohyla | mihanika | Andasibe | M | PT | 2 | 2 | T | + | 1 | – | – | – | 4* | 2 |
Plethodontohyla laevis may be distinguished from other members of the genus Plethodontohyla as follows: from P. inguinalis, P. notosticta, P. guentheri, P. mihanika and P. fonetana by non-expanded terminal digits (vs. moderately to strongly expanded) and by its knob-shaped terminal phalanges of the fingers and toes (vs. T- or Y-shaped) and from all these species except P. fonetanaby the absence of a dorsolateral colour border (present in all of these species but only some specimens of P. inguinalis). It also differs from P. notosticta, P. guentheri and P. mihanika by having a rounded snout tip (vs. generally pointed); from P. ocellata, P. bipunctata, P. brevipes, P. inguinalis and P. tuberata by smooth skin (vs. granular or tubercular); from P. inguinalis, P. notosticta, P. guentheri and P. mihanika by the presence of a supratympanic fold running from the posterior border of the eye backward until the forelimb (vs. absence); from all species of Plethodontohyla except P. alluaudi and P. sp. Ca01 by the presence of a bold, mostly white-bordered ‘X’ marking (see Fig.
Plethodontohyla alluaudi (as newly circumscribed) and P. sp. Ca01 are morphologically the most similar species to P. laevis (see also Figs
Plethodontohyla laevis also resembles Rhombophryne botabota, R. laevipes, R. mangabensis and R. savaka in external morphology and in some aspects of its colouration. It may be distinguished from all species by the presence of a bold, mostly white-bordered ‘X’ marking on the head (vs. absence), but additionally it may be distinguished from all four of these species by the absence of clavicles; from R. laevipes by its smaller size (SVL 36.8–42.2 mm vs. 44.5–56.3 mm), much shorter leg length (HIL/SVL 1.24–1.58 vs. 1.75–1.86) and absence of white ocelli in the inguinal region (vs. presence); from R. laevipes and R. mangabensis by its smaller tympanum (TD/ED 0.33–0.52 vs. 0.57–0.73); from R. botabota, R. mangabensis and R. savaka by its larger size (SVL 36.8–42.2 mm vs. 20.4–32.2 mm); from R. savaka by its slightly narrower head (HW/HL 1.41–1.79 vs. 1.80), longer relative forelimb length (FORL/SVL 0.50–0.57 vs. 0.43), raised supratympanic fold (vs. not raised) and absence of a diastema in the vomerine teeth (vs. presence); and from R. botabota and R. mangabensis by generally shorter relative tibia length (TIBL/SVL 0.36–40 vs. 0.38–0.45).
(
After more than a century in preservative (holotype collected in September 1904) colouration is faded. Dorsum light brown with darker brown-black spots, markings and presence of a bold X-shaped marking bordered with a white line on the head behind the eye. Colouration of the proximal dorsal portion of the hindlimbs mottled with dark brown markings on a cream background colour; the same colouration extends into the inguinal region. Colouration of the distal dorsal portion of the hindlimbs light brown with faint brown crossbands. Sides of head and tympanic region brownish, with darkener flecks. Ventral skin markedly pigmented: throat and chest mottled brown and cream, abdomen and ventral legs cream, becoming increasingly mottled with faint brown distally. The colouration in life of this specimen is not known.
In the following, we describe notable and important diagnostic characters of Plethodontohyla laevis based on
The skeleton of Plethodontohyla laevis (
Right humerus fractured in
The colouration in life is remarkably variable. Dorsal colouration is a range of brown tones, while ventral colouration contains elements of grey, black and beige. The most consistent element is a more or less bold, X-shaped marking on the back of the head, with the anterior arms of the X reaching onto the posterior of each eye, and the posterior arms reaching posteriorly to either join the dorsal pattern (typically fading) or remaining clearly distinct in the suprascapular region. This distinctive marking is present in the dorsal colouration also in juveniles (B. Ferrier, personal communication) and is clear in most adults, though it can sometimes be faded and not clearly distinct from the rest of the dorsal colouration. Posterior to this ‘X’, the dorsum is typically dark brown mottled with black, with generally clearly defined, subsymmetrical light brown markings distributed over the dorsum. In some specimens there are also black spots on the flanks. The lateral head is typically light brown (the colour of the dorsal markings), the supratympanic fold somewhat lighter and the tympanum containing a dark spot. In the inguinal region, black spots and light brown spots merge to form lines, but do not form a clearly defined, single black spot as in e.g. P. alluaudi. The dorsal thigh is mottled black with light brown, semi-regular spots, or with moderately defined dark and light crossbands, whereas the dorsal shank is a murky brown with irregular light brown spots or light brown with dark crossbands. The dorsal forelimb is as the shank. The ventral body is beige in base colour, with irregular dark brown mottling over the chin, which can be totally black in males, becoming less regular posteriorly over the abdomen and being free of maculations over the hip. The ventral shank is mostly beige, sometimes with dark spots. A light brown annulus is present before the tip of each finger.
Morphometric variation is given in Table
Little information is available on this species. The eight new specimens were found active on the ground during the day or during the night, and this species was also found moderately active in dry conditions (after several days of no rainfall). In November 2013 one individual (not collected) was encountered along a drift fence during a rainy night.
Plethodontohyla laevis is known from (1) the type locality Sakana (whence no recent records for the species are known), (2) Betampona Natural Reserve, (3) Marovato, (4) Anivorano Est, (5) Analalava-Foulpointe and (6) the Réserve Privée (RP) d’Ambodiriana (only photographic records are available from this locality) (Figs
The species occurs at least in two protected areas, where it seems to be a relatively abundant although it is a species with secretive habits. Nevertheless, its distribution is highly fragmented, its extent of occurrence is quite limited (minimum convex polygon = 9770.92 km2) and it is threatened by on-going habitat destruction. These factors (range under 20,000 km2, severely fragmented distribution and on-going habitat destruction) qualify P. laevis as Vulnerable under criterion B1ab(iii) of the IUCN Red List (
Advertisement calls were recorded from a single male (
Sequences of this species have been referred to as Plethodontohyla bipunctata Andohahela by
The original description of Dyscophus alluaudi is based on a single specimen of 47.4 mm SVL from the generic locality ‘Fort Dauphin’. After the examination and comparison of the type material with recently collected material in south-eastern Madagascar close to the type locality of Dyscophus alluaudi, we here reassign this species to the genus Plethodontohyla. We therefore re-describe and redefine Plethodontohyla alluaudi based on the holotype (including its osteology via micro-CT scanning), on the holotype of P. laevis tsianovohensis and the recently collected material from Andohahela, Tsitongambarika and Sainte Luce.
MNHN 1901.235, an adult female collected by M. Alluaud in ‘Fort Dauphin’.
MNHN 1936.0047, holotype of P. laevis tsianovohensis, an adult female collected by R. Heim between 1934 and 1935 in Tsianovoha, East Madagascar.
(see also Tables
Plethodontohyla alluaudi may be distinguished from other members of the genus Plethodontohyla as follows: from P. inguinalis, P. notosticta, P. guentheri, P. mihanika and P. fonetana by non-expanded terminal digits (vs. moderately to strongly expanded) and by its knob-shaped terminal phalanges of the fingers and toes (vs. T- or Y-shaped) and from all these species except P. fonetana by the absence of a dorsolateral colour border (present in all of these species but only some specimens of P. inguinalis). It also differs from P. notosticta, P. guentheri and P. mihanika by having a rounded snout tip (vs. generally pointed); from P. ocellata, P. bipunctata, P. brevipes, P. inguinalis and P. tuberata by smooth skin (vs. granular or tubercular); from P. inguinalis, P. notosticta, P. guentheri and P. mihanika by the presence of a supratympanic fold running from the posterior border of the eye backward until the forelimb (vs. absence); from all species of Plethodontohyla except P. laevis and P. sp. Ca01 by the presence of a bold white-bordered ‘X’ marking on the head (vs. absence); from P. laevis, P. sp. Ca01, P. ocellata, P. inguinalis, P. notosticta, P. guentheri, P. fonetana and P. mihanika by a tibiotarsal articulation reaching the insertion of the arms (vs. see Table
Plethodontohyla laevis and P. sp. Ca01 are morphologically the most similar species to P. alluaudi. Plethodontohyla alluaudi can be distinguished from P. laevis by frequent presence of inguinal spots (vs. general absence), generally larger tympanum size (TD/ED 0.33–0.66 [0.53–0.66 for three of the four examined specimens] vs. 0.33–0.52) and tendency toward larger relative hand size (HAL/SVL 0.23–0.28 vs. 0.21–0.25, Mann-Whitney U-test, P = 0.085).
(based on MNHN 1901.235). Specimen in relatively good state of preservation (Figs
After over a century in preservative, the colouration is strongly faded, and several details of the pattern originally illustrated by
In the following, we describe notable and important diagnostic characters of Plethodontohyla alluaudi based on MNHN 1901.235, MNHN 1936.47 and
Ossification is variable, but lowest in
Dorsally a greenish brown colouration, with a distinct dark brown ‘X’ marking on the posterior head, with the anterior arms of the X over the eyes, and the posterior arms reaching the suprascapular region, bordered with a fine, light brown line. The dorsal colouration is flecked with white, with especially large white spots over the ends of the iliac shafts. A large blackish inguinal spot bordered with a white line is present. The flank colouration is marbled brown with white spots. The supratympanic fold is whitish, and forms a weak colour border between the dorsal colouration and the richer brown lateral head. The arm is anteriorly darker brown, almost blackish. The dorsal thigh is also darker brown, but not blackish. The ventral colouration is translucent and thus peach over the chin and pinkish over the abdomen, invaded on the sides behind the pectoral girdle by brown flecks, but not meeting medially. The ventral thighs are also pinkish, anteriorly and posteriorly with brown flecks. A yellow-cream annulus is present before the tip of each finger.
Morphometric variation is given in Table
At Andohahela specimens were found in the leaf litter of rainforest during the day. In Anosyenne Chain (Tsitongambarika) the specimen was found at night under leaf litter not far from the edge of the forest patch. Males from the Sainte Luce population have been heard calling in large choruses from hidden positions after heavy rainfall during the day and night, both inside the forest and in more open areas. During such periods choruses consist of many dozens of individuals. Individuals are extremely hard to detect and cease calling if they notice any disturbance, retreating into their burrows and hiding places in the forest floor. Individuals may be seen travelling above ground on rainy nights, particularly in areas in close proximity to small water bodies such as shallow forest streams, the margins of swamps and even in ephemeral mud puddles. At Sainte Luce, one adult specimen was found during the day, in light rainfall, underneath a log in littoral forest; and a juvenile specimen was found during the day in dry weather in severely degraded habitat, inside the shell of a deceased large land snail. The body of this individual became bloated during initial handling. In mature forest, adult individuals have also been observed beneath dead Pandanus leaves, under dead fallen trees and dead logs. No feeding or reproductive behaviour has been observed.
Plethodontohyla alluaudi is known from (1) the type locality ‘Fort Dauphin’ (or Tolagnaro, whence there are no recent records for the species, although this collection site was probably a very generic one), (2) Andohahela National Park, (3) Tsitongambarika Forest Reserve, (4) Sainte Luce and (5) Tsianovoha. Observations in Sainte Luce have been made in two of the largest forest fragments (fragments S7 and S9). All these sites are distributed at low altitudes in the East or south-eastern of Madagascar. Altitudinal distributional range extends from sea level to ca. 230 m a.s.l.. It is not clear where the type locality of this species is, but if it was a forest in the vicinity of Tolagnaro, then it is quite possible that it has been extirpated due to forest destruction there. Surveys in nearby Nahampoana and Mandena forests have so far failed to report this species, but a more thorough investigation of the area is required to confirm the presence or absence of this species in that area.
The species occurs at least in three protected areas, where it seems to be a relatively abundant although it has very secretive habits. Nevertheless, its distribution is highly fragmented, its extent of occurrence is quite limited (minimum convex polygon = 5372.81 km2) and it is threatened by on-going habitat destruction. As for P. laevis, it therefore qualifies as Vulnerable under IUCN Red List criterion B1ab(iii) (
Advertisement calls were recorded from a chorus of males at Sainte Luce (24°46’51.72”S, 047°10’13.14”E; 10 m a.s.l.) on 30 June 2015, around 15:00 h at an air temperature of 24 °C (Table
The resurrection of Plethodontohyla laevis and transfer of Dyscophus alluaudi from Rhombophryne to the genus Plethodontohyla brings this genus to 11 nominal species (not including the dubious P. angulifera Werner, 1903), and Rhombophryne down to 18. At present, only two other candidate species are known from Plethodontohyla (one from Tsaratanana and P. sp. Ca01 from Ambatolahy and Imaloka, which might be conspecific with P. alluaudi), but preliminary results suggest that the undescribed diversity in this genus is still widely unexplored and it will probably wind up being as great as it was for Rhombophryne (
The cophyline microhylids are a case study of the need for an integrative taxonomic approach (
Cophyline microhylids are still the least understood amphibians of Madagascar and the recent major advances in cophyline taxonomy would not have been possible without the collection of new material. However, more extensive and widespread collection of specimens from across Madagascar is still needed to fully characterize species distribution ranges and clarify their systematics. At least two new genera are still in need of description (
We are grateful to the Malagasy authorities, in particular the Ministère de l’Environnement et des Forêts, for issuing research and export permits. We extend our thanks to Karen Freeman and Ingrid Porton of Madagascar Fauna and Flora Group. Fieldwork was financially supported by the Saint Louis Zoo’s Field Research for Conservation program (FRC# 12-12) of the Wildcare Institute and Gondwana Conservation and Research. We thank Chantal Misandeau and Lauric Reynes for sharing their photographs of the amphibians of Ambodiriana. The Institute for the Conservation of Tropical Environments (ICTE-MICET) provided crucial logistic support. We are grateful to the teams of the Muséum National d’Histoire Naturelle de Paris (France), the Naturmuseum Senckenberg in Frankfurt am Main (Germany) and the Mention Zoologie et Biodiversité Animale, Université d’Antananarivo (Madagascar) for the loan of material pertaining to this paper. We thank the reviewers for their useful comments that significantly improved the manuscript. We are indebted to Miguel Vences for having provided three unpublished POMC sequences used in this work. This work was funded by Portuguese National Funds through FCT - Foundation for Science and Technology under the IF/00209/2014/CP1256/CT0011 Exploratory Research Project. Work of the authors over the past 25 years has been made possible by collaboration accords with the Université d’Antananarivo (Mention Zoologie et Biodiversité Animale) and with the Parc Botanique et Zoologique de Tsimbazaza.
PDF-embedded 3D model of the skeleton of Plethodontohyla alluaudi holotype (MNHN 1901.235)
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PDF-embedded 3D model of the skeleton of Plethodontohyla laevis holotype (
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PDF-embedded 3D model of the skeleton of Plethodontohyla laevis tsianovohensis holotype (MNHN 1936.47)
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PDF-embedded 3D model of the skeleton of
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PDF-embedded 3D model of the skeleton of
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PDF-embedded 3D model of the skeleton of
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