Research Article |
Corresponding author: Jörn Köhler ( joern.koehler@hlmd.de ) Academic editor: Pedro Taucce
© 2024 Jörn Köhler, Frank Glaw, César Aguilar-Puntriano, Santiago Castroviejo-Fisher, Juan C. Chaparro, Ignacio De la Riva, Giussepe Gagliardi-Urrutia, Roberto Gutiérrez, Miguel Vences, José M. Padial.
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Citation:
Köhler J, Glaw F, Aguilar-Puntriano C, Castroviejo-Fisher S, Chaparro JC, De la Riva I, Gagliardi-Urrutia G, Gutiérrez R, Vences M, Padial JM (2024) Similar looking sisters: A new sibling species in the Pristimantis danae group from the southwestern Amazon basin (Anura, Strabomantidae). Zoosystematics and Evolution 100(2): 565-582. https://doi.org/10.3897/zse.100.119143
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We describe a new frog species that is the sibling of Pristimantis reichlei. These two sister species inhabit the Amazonian lowlands and adjacent foothills of the Andes, from central Bolivia to central Peru. Pristimantis reichlei occurs from central Bolivia to southern Peru (Alto Purús National Park), while the new species occurs from northern Bolivia (Departamento Pando) to Panguana in central Peru (Departamento Huánuco), at elevations between 220 and 470 m a.s.l. In spite of their morphological crypsis, these siblings occur in syntopy without evidence of interbreeding (in the Alto Purús area) and are recovered as reciprocally monophyletic. Their uncorrected pairwise genetic distances in the 16S rRNA gene range from 9.5–13.5%, and their advertisement calls differ in both qualitative and quantitative traits. Moreover, our study found uncorrected pairwise distances within the new species of up to 5.0% and up to 9.3% within P. reichlei. We therefore cannot rule out the possible existence of hybrids or additional species-level lineages hidden in this complex. Furthermore, we found another potential pair of sibling species composed of P. danae and an unnamed lineage, with divergences of 9.4% in the 16S gene, whose in-depth analysis and taxonomic treatment are pending future revision. With the new nominal species, the Pristimantis danae species group now includes 20 species, distributed across the upper Amazon basin and in the eastern Andes, from western Brazil to Bolivia and Peru. Our study, together with an increasing number of other studies, indicates that sibling species are far from being rare among Amazonian amphibians and that species resolution remains low even for groups that have received considerable attention in recent years.
Amphibia, bioacoustics, integrative taxonomy, morphology, molecular genetics, systematics, Bolivia, Brazil, Peru
The genus Pristimantis Jiménez de la Espada, 1870 represents an extremely species-rich and ecologically diverse clade of Neotropical frogs. It is considered challenging for researchers with respect to their systematics because of the many genealogically distant species co-occurring in sympatry yet showing highly similar phenotypes, and due to the numerous geographically and phylogenetically distant yet also similar-looking species (e.g.,
The systematics among several populations in southwestern Amazonia and along the eastern Andean slopes of Bolivia and Peru, today considered part of the P. conspicillatus and P. danae species groups, has been historically complex and partly chaotic, with certain populations misidentified at the species level and repeatedly allocated to the wrong groups (see
In a recent study on the taxonomy and systematics of species in the P. conspicillatus group,
Fieldwork was conducted in different areas of the southwestern Amazon basin. Specimens were observed and collected during opportunistic searches during the day and night using torchlights and headlamps. Geographic position was recorded using handheld GPS receivers set to WGS84 datum. Collected specimens were euthanized with an overdose of 5% lidocaine or benzocaine gel applied to the ventral surfaces of individuals (
Morphometric measurements (in millimeters) were taken by CAP, JCC, JK, and JMP with calipers to the nearest 0.1 mm. Measurements taken and used throughout the text are those used by
Vocalizations in the field were recorded using an Edirol R-09 digital recorder with built-in microphones (at 44.1 KHz and 16-bit resolution, saved as uncompressed wave format) or a Sony WM-D6C tape recorder with an attached directional microphone Sennheiser Me-80 (for calls of P. reichlei). Recordings were sampled or re-sampled at 22.05 kHz and 32-bit resolution and analyzed using the software Cool Edit Pro 2.0. Frequency information was obtained through Fast Fourier Transformation (FFT; width 1024 points) at the Hanning window function. Spectrograms were obtained with the Blackman window function with 256 bands resolution. Sensitive filtering was applied to remove background sounds, but only to frequencies outside the prevalent bandwidths of calls. Temporal measurements are summarized as a range, with the mean ± standard deviation in parentheses. Description, terminology, and methods follow those recommended by
Monophyly and sister relationships between the focal lineage and putative new species were tested through phylogenetic analyses of a fragment of the mitochondrial 16S rRNA gene. As revealed by preliminary data presented by
The inferred maximum likelihood tree (log-likelihood: -4805.1412; Fig.
Maximum likelihood phylogenetic tree of selected samples of Pristimantis, representing the P. conspicillatus and P. danae species groups, inferred from an alignment of 496 nucleotides of the mitochondrial 16S rRNA gene. Yunganastes pluvicanorus was used to root the tree. Numbers at nodes are bootstrap values in percent (500 replicates; not shown if <50%) followed by SH-aLRT values (1000 iterations; not shown if <50) as calculated with IQ-Tree. The taxon name is followed by the GenBank accession number, or voucher number for newly produced sequences (bold terminals), and sample locality. Samples highlighted in green indicate the sympatric locality of P. asimus and P. reichlei. Inset photos depict paratopotypes of P. asimus sp. nov. (
Genetic divergences between the target lineages were rather high compared to other known sister lineage divergences in Pristimantis (e.g.,
Genetic distances were also high within two of these four main lineages. While no sequence divergence was found among the P. danae samples from Peru (all from the same or nearby localities) and only up to 0.2% among sequences from Bolivian P. aff. danae, uncorrected pairwise distances within P. aff. reichlei amounted up to 5.0% and within P. reichlei up to 9.3% (between samples from the Bolivian type locality Los Guácharos and Santo Domingo de Carabaya, Peru, but <6% between numerous other populations). See the Zenodo archive (DOI https://doi.org/10.5281/zenodo.10958854) for a table with all pairwise distances.
Our external morphological examination of specimens of the focal lineage P. aff. reichlei and comparisons with paratype specimens of P. reichlei from close to its type locality (Provincia Chapare, Departamento Cochabamba, Bolivia;
Morphometric measurements (in mm) of specimens of Pristimantis asimus sp. nov., P. reichlei, and P. danae, including holotypes and paratypes. BO = Bolivia; PE = Peru; m = male; f = female; subad. = subadult (all other adult specimens); * = paratype; ** = holotype; — = not available. For other abbreviations used, see Material and methods.
sex | SVL | TL | HL | HW | IOD | ED | TD | E-N | HandL | FootL | |
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P. asimus | |||||||||||
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m | 30.6 | 17.9 | 12.1 | 11.2 | 3.1 | 4.3 | 1.9 | 4.1 | 7.8 | 14.3 |
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m | 27.7 | 17.1 | 10.6 | 9.8 | 3.1 | 4.3 | 1.7 | 3.3 | 7.6 | 13.6 |
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m | 27.7 | 17.1 | 11.2 | 9.9 | 3.6 | 4.0 | 2.0 | 3.3 | 7.7 | 13.3 |
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m | 28.3 | 17.0 | 11.3 | 10.1 | 3.5 | 4.0 | 2.1 | 3.6 | 8.1 | 14.2 |
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m | 28.4 | 17.3 | 12.7 | 10.4 | 3.2 | 4.1 | 1.9 | 3.5 | 7.8 | 14.2 |
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m | 30.6 | 17.2 | 12.8 | 10.9 | 3.4 | 3.9 | 2.0 | 4.2 | 7.6 | 13.9 |
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m | 29.8 | 17.7 | 11.9 | 10.6 | 3.7 | 3.9 | 2.1 | 3.9 | 10.0 | 14.1 |
MUBI 12368* PE: La Novia | m | 30.6 | 18.5 | 11.9 | 11.1 | 3.0 | 4.0 | 1.9 | 4.0 | 8.6 | 16.9 |
MUBI 14816* PE: Rio Sepahua | f subad. | 26.0 | 15.4 | 9.6 | 9.5 | 2.7 | 3.0 | 1.5 | 3.3 | 7.2 | 11.4 |
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f | 37.9 | 22.4 | 14.7 | 13.7 | 4.7 | 4.8 | 2.5 | 5.1 | 10.8 | 17.7 |
P. reichlei | |||||||||||
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m | 30.5 | 19.8 | 12.7 | 11.1 | 3.2 | 4.0 | 2.0 | 3.9 | 9.0 | 16.3 |
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m | 27.7 | 15.6 | 10.7 | 9.8 | 3.1 | 4.0 | 1.7 | 3.8 | 8.3 | 14.0 |
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m | 28.2 | 18.3 | 11.3 | 10.8 | 3.5 | 4.6 | 2.2 | 3.6 | 9.3 | 15.4 |
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m | 28.8 | 16.9 | 13.1 | 10.5 | 3.6 | 3.9 | 2.0 | 4.0 | 8.6 | 14.4 |
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m | 27.9 | 16.9 | 11.4 | 9.6 | 2.8 | 3.9 | 2.3 | 3.2 | 8.5 | 14.5 |
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m | 25.3 | 15.4 | 9.6 | 9.1 | — | 3.6 | 1.6 | 3.2 | — | 12.6 |
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f | 32.3 | 20.5 | 12.6 | 11.8 | — | 3.8 | 1.7 | 4.0 | — | 17.0 |
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f | 35.0 | 21.4 | 12.7 | 12.1 | — | 4.6 | 2.0 | 4.4 | — | 17.4 |
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f | 39.1 | 24.4 | 15.2 | 15.0 | 4.3 | 5.4 | 2.6 | 4.8 | 11.8 | 21.5 |
MUBI 8347 PE: Tambopata | f | 33.4 | 19.8 | 12.1 | 11.4 | 4.0 | 4.2 | 1.8 | 4.2 | 8.7 | 14.8 |
MUBI 8347 PE: Tambopata | f | 31.5 | 17.3 | 12.0 | 11.3 | 3.8 | 3.4 | 1.8 | 3.7 | 8.5 | 13.5 |
MUBI 12367 PE: La Novia | f | 30.9 | 19.2 | 12.3 | 11.4 | 3.4 | 4.0 | 1.9 | 4.0 | 8.5 | 14.8 |
P. danae | |||||||||||
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m | 34.3 | 16.8 | 13.6 | 12.9 | — | 5.6 | 2.1 | 4.3 | — | 16.6 |
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m | 30.7 | 17.6 | 12.0 | 11.4 | — | 4.9 | 1.9 | 4.1 | — | 15.1 |
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m | 26.0 | 15.9 | 10.6 | 9.6 | — | 4.4 | 1.7 | 3.7 | — | 13.4 |
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m | 24.3 | 15.7 | 10.9 | 9.9 | 3.5 | 4.2 | 1.8 | 3.6 | 7.9 | 12.5 |
The advertisement call of P. aff. reichlei from Panguana is characterized by being a single pulsatile note, simple in structure, and repeated at irregular intervals (see species account below for a detailed call description). Compared to Bolivian calls of P. reichlei from close to its type locality (
Although only very few call recordings are available for analysis and respective comparisons among the focal lineages in consideration (calls of two individuals of P. aff reichlei and three individuals of P. reichlei), the qualitative and quantitative differences in advertisement call structure revealed are far beyond those that could be attributed to intra-specific call variation (see
Calls of P. danae from Manu National Park in Peru (https://soundcloud.com/user-416416746/pristimantis-danae?in=user-416416746/sets/cantos-de-nfibios-del-pn-manu) are trill-like calls of approximately 80–120 ms duration, composed of 3–4 widely spaced pulses (pulse rate approximately 30 pulses/second). Calls of P. aff. danae from Bolivia are characterized by being composed of two notes, each note containing two distinctly separated pulses only (
In summary, the bioacoustic differences observed among the clades here allocated to P. reichlei, P. danae, P. aff. danae, and the focal lineage P. aff. reichlei provide further evidence for the specific distinctness of respective lineages, particularly in view of the partly sympatric occurrence of P. reichlei and P. aff. reichlei (see below). Consequently, we describe the lineage hitherto referred to as P. aff. reichlei as a new species.
This species has been previously referred to as Eleutherodactylus peruvianus by
Holotype.
Paratypes. A total of 16 specimens:
A medium-sized species of the Pristimantis danae species group (based on molecular relationships and morphological similarity), with 27.7‒30.6 mm SVL in adult males (n = 7), and 37.9 mm SVL in adult females (n = 1), characterized by: (1) skin on dorsum finely shagreened, lacking enlarged tubercles or warts; throat smooth, venter areolate; discoidal fold inconspicuous; dorsolateral folds absent; upper eyelid lacking tubercles and granules; posterior surfaces of thighs smooth; (2) tympanic membrane and annulus distinct, slightly higher than long, their length less than half of eye diameter; supratympanic fold prominent, curved, slightly covering upper edge of tympanic annulus; (3) head slightly longer than wide; snout subacuminate in dorsal view, bluntly rounded in lateral profile; canthus rostralis straight in dorsal view, slightly rounded in profile; (4) cranial crests absent; (5) dentigerous process of vomers elongate, oblique, situated posteromedial to choanae; (6) males with vocal slits, single subgular vocal sac; indistinct nuptial asperities on dorsal surface of thenar tubercle; (7) hands with slender fingers, first finger slightly shorter or about equal in length to second; subarticular tubercles subconical, prominent; supernumerary tubercles absent; palmar tubercle cordiform; thenar tubercle prominent, elongated; terminal discs of inner two fingers enlarged and round, those of external fingers enlarged, truncate, about twice the width of digit proximal to disc; circumferential grooves conspicuous, ungual flap not indented; narrow lateral fringes on fingers weakly developed; basal webbing between fingers absent; (8) ulnar tubercles absent; (9) tubercles on heel and tarsus absent, tarsal fold present; (10) inner metatarsal tubercle prominent, ovate; outer metatarsal tubercle small, round, flat, barely recognizable in life, virtually absent in preservative; supernumerary tubercles absent; (11) toes long and slender; lateral fringes narrow, weak; basal toe webbing present; toe V reaching beyond distal level of penultimate subarticular tubercle of toe IV; tips of toes rounded to slightly ovate, enlarged; circumferential grooves conspicuous; (12) in life, dorsal coloration light brown, reddish-brown, or tan, usually with dark brown chevrons and flecks on dorsum; dark brown bars on dorsal surfaces of arms and legs; a pair of black spots dorsolaterally in scapular region; black supratympanic stripe; black canthal stripe; belly creamy white; throat with fine dark mottling in males; posterior surfaces of thighs blackish with yellowish-cream spots and flecking; iris bronze, with black reticulation in life; posterior iris periphery cream to turquoise; bones white; (13) advertisement call consisting of a single pulsatile note of 23–47 ms duration and with a dominant frequency of 3289–3628 Hz, repeated at irregular intervals, containing groups of 2–4 calls repeated in faster succession.
Pristimantis asimus differs from other species in the Pristimantis danae species group as follows: The new species differs from P. albertus, P. attenboroughi, P. bounides, P. clarae, P. cosnipatae, P. humboldti, P. ornatus, P. pharangobates, P. puipui, P. rhabdolaemus, P. sagittulus, P. similaris, P. stictogaster, and P. toftae, at least by the lack of dorsolateral folds (versus presence). Furthermore, P. attenboroughi, P. bounides, P. humboldti, and P. puipui have stout bodies with relatively shorter legs when compared to P. asimus. Pristimantis attenboroughi and P. puipui lack a tympanum (prominent in the new species), and P. attenboroughi lacks vocal slits in males (present in the new species). Pristimantis clarae additionally differs from the new species by dorsal and ventral color pattern, advertisement call, and smaller adult male size (12.9–15.6 versus 27.7–30.6 mm). As the new species, P. aniptopalmatus lacks dorsolateral folds (
Morphologically, P. asimus is most similar or even cryptic to P. danae and P. reichlei. However, as a tendency, nominal P. danae (from Kosñipata valley, Peru) exhibit a more contrasting dorsal color pattern in life (see, e.g.,
Comparative plate showing plantar surfaces of the right feet of preserved type specimens of Pristimantis asimus sp. nov. (all from Panguana, Huánuco, Peru) and P. reichlei (all from Chapare, Cochabamba, Bolivia). Red arrows point to the outer metatarsus, showing the virtual absence versus the presence of an outer metatarsal tubercle. Not to scale.
Schematic line drawings of dorsal views of the heads of male Pristimantis asimus sp. nov. and P. reichlei, exemplifying the differing outlines of the canthus rostralis (bold line), resulting in the visibility of different portions of the nostrils (red) in straight dorsal view. Not to scale.
The new species occurs in sympatry with some species of the P. conspicillatus group, which superficially may have a similar appearance. However, these are distinguishable from P. asimus by molecular phylogenetic relationships, differences in advertisement calls, and most of them by different relative finger lengths, i.e., the first finger being longer than the second. However, the sympatric P. iiap has the first and second fingers equal in length but differs from the new species at least by exhibiting distinct dorsolateral folds (
An adult male, in good state of preservation (Fig.
In life (Fig.
For variation in morphological measurements among type specimens, see Table
Paratypes of Pristimantis asimus sp. nov. in life (dorsolateral and ventral views): a.
Male paratopotype (FGZC 6334) of Pristimantis asimus sp. nov. in life at: a. Night coloration in situ; b. Day coloration the day after collection, demonstrating a limited ability of color change. Note the dark brown, almost black, loreal region and upper lip in the day coloration, resulting in a dark facemask.
At Panguana, individuals of this species have been observed being active at night, perching on small trees and bushes within disturbed primary forest.
Advertisement calls of Pristimantis asimus, emitted by the male
Audiospectrograms and corresponding oscillograms of the advertisement calls of Pristimantis asimus sp. nov. from the type locality Panguana, Peru (emitted by paratype
As far as known and confirmed by bioacoustic and/or genetic data, P. asimus occurs in lowland rainforests from the southern Departamento Huánuco (Panguana, type locality) and eastern Departamento Ucayali (Breu, Río Yurua) southward across most of the lowlands of southeastern Peru, reaching the border of Machiguenga Communal Reserve (Departamento Cusco) and Manu National Park (Departamento Madre de Dios) in the south as well as northernmost Bolivia (Bioceanica, Departamento Pando) to the east (Fig.
Schematic map of central-western South America showing the known distribution of species of the Pristimantis danae group referred to in the text, as inferred by molecular genetics and/or bioacoustic data. Broadly overlapping symbols may refer to the same locality. Square symbols refer to the type localities of the respective species.
The specific epithet is a Latinized adjective derived from the Greek άσημος (ásimos), meaning ‘inconspicuous, nameless’. It refers to the morphologically cryptic nature of the new species and the fact that it has been associated with different species names in the past, missing its status as a separate species to be named.
Morphological crypsis among genetically distant (i.e., non-sister) species seems to be uncommon among anuran species (e.g.,
Like in the case of the species pair Pristimantis asimus and P. reichlei, it is increasingly common that studies of Neotropical amphibians reveal sister and similar-looking species showing large genetic divergences (
Within the Pristimantis danae species group,
Given that morphological differences between P. asimus and P. reichlei are yet to be corroborated, identification of the two species can be considered reliable only with the aid of bioacoustic and/or molecular genetic analyses. Consequently, several published records referring to P. reichlei should be reviewed. These include lowland records from the Bolivian departments of Beni and La Paz (
With the description of P. asimus, we accounted for a more adequate taxonomic resolution of frogs formerly subsumed under the name P. reichlei (sensu
As evidenced by our molecular phylogenetic analysis and the mentioned differences in advertisement calls, the situation of P. asimus and P. reichlei is somehow paralleled by a second species pair, namely P. danae from Peru and P. aff. danae from Bolivia (see Fig.
Despite the still substantial limitations in geographic and character sampling outlined above, our understanding of species limits in Pristimantis is rapidly growing. It is now customary in phylogenetic studies of Pristimantis to discover the existence of unnamed species overlooked and confounded across the range with their similar-looking nominal sister species or closely related ones (e.g.,
In contrast to the growing taxonomic knowledge in the P. danae group, there is a disproportional lack of knowledge about the ecology and natural history of its species, which remains almost completely unknown.
Collecting permits for specimens in MUBI and