Research Article |
Corresponding author: Nadeshinie Parasram ( nadeshinie.parasram@mycavehill.uwi.edu ) Academic editor: Sammy De Grave
© 2024 Nadeshinie Parasram, William Santana, Yvonne Vallès, Amanda М. Windsor, Henri Vallès.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Parasram N, Santana W, Vallès Y, Windsor AМ, Vallès H (2024) Morphological and molecular support for Amphithrax verrucosus (H. Milne Edwards, 1832) and Amphithrax aculeatus (Herbst, 1790) (Crustacea, Decapoda, Brachyura) as valid species. Zoosystematics and Evolution 100(1): 15-30. https://doi.org/10.3897/zse.100.109192
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The large degree of morphological variations, particularly amongst juveniles, has led to inconsistencies in the literature regarding the taxonomic status of Amphithrax aculeatus (Herbst, 1790) and Amphithrax verrucosus (H. Milne Edwards, 1832). As a result of recent biodiversity sampling initiatives in Barbados, West Indies, multiple specimens of Amphithrax aculeatus and A. verrucosus have been collected. This has prompted us to undertake a thorough reassessment of their morphological and molecular characteristics. Moreover, morphological differences in the carapace, antennae, chelipeds, pereopods and the male first gonopod (G1) supports A. aculeatus and A. verrucosus as separate species. Molecular phylogenetic analysis, based on newly-generated sequences of the 12S rRNA, 16S rRNA and ITS-1 genes also shows that A. verrucosus is a separate species and sister taxa to A. aculeatus. The total number of species within the genus Amphithrax is now brought to eleven. However, our molecular analysis also shows that the taxonomic placement of Amphithrax armatus (Saussure, 1853) within Amphithrax is questionable.
Amphithrax, 12S, 16S, ITS-1, Lesser Antilles, Mithracidae
The superfamily Majoidea Samouelle, 1819, consists of over 950 species of ecologically and economically important brachyuran crabs (
Amphithrax aculeatus was originally described as Cancer aculeatus by Herbst in 1790. Later, in 1816, Latreille described the genus Mithrax and designated Cancer aculeatus Herbst, 1790 as its type species. After that, H. Milne Edwards, in 1832, described Mithrax verrucosus, based on syntypes collected from the Antilles, specifically from Martinique. Subsequent research by
The early 20th century was marked by Rathbun’s taxonomic revisions, which had a significant influence on the genus’s classification. In her 1901 work, she proposed a synonymy between M. pilosus and M. aculeatus, treating the latter as a junior synonym of the former. Furthermore, in her 1925 work, she designated both M. trispinosus and M. plumosus as junior synonyms of M. verrucosus. However, Rathbun provided no explanation for these taxonomic changes.
The latter half of the 20th century saw a continuation of these taxonomic debates. Researchers such as
More recently, molecular approaches to taxonomy have become central to species delineation. Based on molecular evidence from three mitochondrial (12S, 16S, COI) and two nuclear genes (18S, H3),
In more recent studies,
A total of sixty-two (62) specimens of Amphithrax aculeatus (24) and A. verrucosus (38) were collected from nearshore rubble and shallow subtidal habitats (~ 4 m depth) on the west and south coasts of the island of Barbados, West Indies (Fig.
Information regarding the synonym, geographic distribution, material examined, and general remarks are included for each species. The morphological terminology follows that of
Additional abbreviations used in the text are: CW = carapace width (measured dorsally at the widest point of the carapace, including lateral spines); CL = carapace length (measured from the bottom of the rostral sinus to the posterior margin of the carapace). Measurements for some studied specimens were not taken; Idem = The aforementioned locality; ♂ = male; ♀ = female; juv. = juveniles; ovig. = ovigerous females; G1 = male first gonopod; cm = centimetre; mm = millimetre; m = metre; fig./figs = figure/s; tab. = table; vol.= volume; BI = Bayesian Inference; ML = Maximum Likelihood; SEM = Scanning Electron Microscope; Pp = Posterior Probability. Specimens examined are deposited in the Barbados Laboratory of Systematic Zoology, University of the West Indies, Barbados (
Muscle tissue was extracted from the ambulatory legs and chelipeds from 10 specimens each of A. aculeatus and A. verrucosus and total genomic DNA was extracted from the fresh muscle tissue using the ZYMO Quick-DNA Miniprep DNA extraction kits (catalogue # D3025), following the manufacturer’s instructions. The tissue lysis stage was modified to incubate the muscle tissue in Proteinase K for one hour instead of the three hours suggested by the protocol, as this provided better results. Partial sequences of the two mitochondrial (12S rRNA, 16S rRNA) and one nuclear (ITS-1) genes were amplified with the following primers 12Sai/12Sbi (
Polymerised chain reactions (PCR) were carried out in 25 μl volumes with concentrations as follows: 12.5 μl (2X) Master Mix (Applied Biosystem), 0.5 μl (10 μM) of each primer, 6.5 μl of nuclease free water and 5 μl of template DNA. PCR amplifications for each gene were as follows: for 12S, initial denaturation of 2 min, followed by 35 cycles of denaturation for 30 s at 94 °C, annealing for 30 s at 55 °C, extension for 1 min at 72 °C and a final extension for 7 min at 72 °C; for 16S, initial denaturation of 2 min, followed by 35 cycles of denaturation 30 s at 94 °C, annealing for 30 s at 52 °C, extension for 1 min at 72 °C and a final extension for 5 min at 72 °C; and for ITS-1, initial denaturation of 3 min, followed by 35 cycles of denaturation for 0.15 s at 94 °C, annealing for 0.45 s at 57 °C, extension for 1 min at 72 °C and a final extension for 10 min at 72 °C. Amplified PCR products were visualised on 2% agarose gels and PCR amplicons were sent to Macrogen (Seoul, Republic of Korea) for bi-directional sequencing.
Sequences obtained by this study for A. aculeatus and A. verrucosus were combined with those from
Alignments for the 12S, 16S and ITS-1 genes were concatenated in Geneious Prime and phylogenetic trees were constructed using maximum likelihood (ML) and Bayesian inference (BI) methods on the concatenated loci. ML analyses were conducted by RAxML v.8.2.11 (Randomized Accelerated Maximum Likelihood;
In RAxML, we used the ‘-f a -x 1’ algorithm option and RAxML estimated all free parameters. In MEGA11, we used the default settings for likelihood parameters with partial deletion of gaps in the alignment. BI analysis of Posterior Probability (Pp) was conducted on the concatenated loci using MrBayes (plugin v.3.2.6:
Taxa included in the phylogenetic analysis with locality, catalogue number, and GenBank accession numbers. Newly-sequenced specimens are highlighted in bold. GMx, Gulf of Mexico; water body names preceded by N, S, E or W to indicate northern, southern, eastern, or western, respectively; –, no sequence identifier available.
Taxon name | Locality | Catalogue No. | GenBank Accession Nos. | ||
---|---|---|---|---|---|
12S | 16S | ITS-1 | |||
Amphithrax aculeatus | W Atlantic, Barbados |
|
OR267308 | OR267299 | – |
W Atlantic, Barbados |
|
OR267309 | OR267300 | – | |
W Atlantic, Barbados |
|
OR267311 | OR267302 | OR260473 | |
W Atlantic, Barbados |
|
OR267312 | OR267303 | – | |
W Atlantic, Barbados |
|
OR267310 | OR267301 | OR260472 | |
Amphithrax armatus | E Pacific, Taiwan | NMMBCD 4083 | – | MG281843 | – |
Amphithrax caboverdianus | E Atlantic, Cape Verde Island |
|
KF453086 | KF452982 | – |
Amphithrax braziliensis | S Atlantic, Brazil | CCDB_BRA 5060 | – | MF178237.1 | – |
Amphithrax hemphilli | Caribbean, Belize |
|
KF453133 | KF453024 | – |
Amphithrax verrucosus | Caribbean, Panamá |
|
– | MK971519.1 | – |
W Atlantic, Florida |
|
KF453096 | KF452993 | – | |
Caribbean, Belize |
|
KF453131 | KF453022 | – | |
Amphithrax verrucosus | W Atlantic, Barbados |
|
OR267313 | OR267304 | – |
W Atlantic, Barbados |
|
OR267134 | OR267305 | OR260474 | |
W Atlantic, Barbados |
|
OR267316 | OR267307 | – | |
W Atlantic, Barbados |
|
OR267315 | OR267306 | OR260475 | |
Amphithrax verrucosus | W Atlantic, Venezuela | MOBR-C-1529 | – | GQ438765 | – |
W Atlantic, Venezuela | MOBR-C-1529 | – | GQ438766 | – | |
Hemus cristulipes | E GMx, Florida |
|
KF453100 | KF452995 | – |
Hemus magalae | E Pacific, Panamá |
|
KF453144 | KF453034 | – |
Maguimithrax spinosissimus | Caribbean, Belize |
|
KF453130 | KF453021 | – |
Mithraculus cinctimanus | Caribbean, Belize |
|
KF453091 | KF452988 | – |
Mithraculus coryphe | Caribbean, Belize |
|
KF453135 | KF453026 | – |
Mithraculus sculptus | W Atlantic, Florida |
|
GU144526 | GU144539 | – |
Mithrax hispidus | W Atlantic, Florida |
|
GU144532 | GU14450 | – |
Omalacantha antillensis | W Atlantic, Florida |
|
KF453099 | KF452994 | – |
Omalacantha bicornutus | Caribbean, Belize |
|
KF453116 | KF453008 | – |
Thoe puella | Caribbean, Colombia |
|
KF453136 | KF453027 | – |
W Atlantic, Florida |
|
KF453095 | KF452992 | – | |
Outgroup taxa | |||||
Libinia emarginata | N GMx, Louisiana |
|
KF453078 | KF452974 | – |
Maja brachydactyla | E Atlantic, Spain |
|
KF453082 | KF452978 | – |
Our study generated new sequences for both A. aculeatus and A. verrucosus from specimens collected in Barbados. These sequences, along with sequences available from GenBank, were used to determine the taxonomic status of A. verrucosus and to establish its phylogenetic relationship with A. aculeatus. All three genes (12S rRNA, 16S rRNA and ITS-1) were successfully amplified and the phylogenetic analysis consisted of 31 terminals (including outgroup taxa, Table
A. BI molecular phylogenetic tree for Amphithrax verrucosus, A. aculeatus and other selected species within the family Mithracidae MacLeay, 1838. Based on GTR+G nucleotide substitution model on the concatenated dataset for two mitochondrial (12S, 16S) and one nuclear (ITS-1) genes, represented as a maximum likelihood phylogram with Bayesian posterior probabilities and maximum likelihood bootstrap values (black diamond = ≤ 50% support, * = 16S sequences only). Note:
Amphithrax forms a monophyletic group with the Western Atlantic species A. hemphilli (Rathbun, 1892) at the basal position. Amphithrax verrucosus is well supported (ML = 91%, Pp = 0.989) as a separate species and sister taxa to A. aculeatus. All specimens previously identified by
Our phylogenetic results show A. armatus forming a clade with Maguimithrax Klompmaker, Portell, Prueter & Tucker, 2015, and Mithrax Latreille, 1816, and not with Amphithrax, but the support for this relationship is very low [(ML ≤ 50%, Pp = 0.634) (Fig.
Genus Amphithrax Windsor & Felder, 2017
Cancer aculeatus Herbst, 1790: 248, pl. XVIII, fig. B, pl. XIX, fig. 104 [type-locality: Americas (probably between Florida and Venezuela); holotype (
Cancer spinipes Herbst, 1790: 241, pl. XVII, fig. 94 [type locality: probably West Indies; type: probably lost]. —
Mithrax aculeatus
— H.
Mithrax pilosus
Rathbun, 1892: 262, pl. 39 [type-locality: Abaco Island, Bahamas; holotype (
Mithrax (Mithrax) aculeatus — Young, 1900: 90.
Mithrax (Mithrax) pilosus
— Rathbun, 1925: 394, pl. 138, fig. 3; 1933: 29;
Amphithrax aculeatus
— Windsor & Felder, 2017: 1;
Type material. Paralectotype of Cancer aculeatus Herbst, 1790: Americas • dry carapace only,
Puerto Rico, Playa de Ponce, Lighthouse Reef • 1 ♂, 1 juv. ♂ (CW: 23.0; 9.0 mm; CL: 21.0; 9.0 mm) (
Carapace with acute spines dorsally, mainly in gastric, branchial, cardiac regions. Third antennal segment with long spine distolaterally, distinctly visible dorsally. Chelipeds slender; carpus with strong, sharp spines. Palm of chela with 4–5 spines on the upper margin. Propodus of pereopods with two to four spines on the proximal half. Carapace olive green to brown in colour.
Herbst (1790: 248) referred to Cancer aculeatus as a “very rare American crab”, but Amphithrax aculeatus is very abundant in Barbados. It is possible that the Herbst assessment of the rarity of this species is due to sampling biases (methodology used and sampling time), which resulted in a small number of specimens collected and deposited to the Berlin Museum (
In the same work, Herbst (1790) described Cancer spinipes, and both its description and figure resemble A. verrucosus. However,
Amphithrax aculeatus can be separated from A. verrucosus by: (i) the carapace densely setose, forming a velvet-like cover in both juvenile and adult specimens (Figs
Ontogenetic intraspecific variations in A. aculeatus from juveniles to adults are: spines on the carapace, carpus, and pereiopods become larger and more acute, but can be broken in the larger individuals. In some juvenile specimens, the gastric region of the carapace has more sparse setae than other regions and the dorsal surface also has the presence of flattened granules, five spines on anterolateral margins, with small and blunt accessory spines. In contrast, adults have the dorsal and ventral surface of the cephalothorax covered in short tuft setae, which has the appearance of a velvet mat; the granules on dorsal surface of the carapace develop into spines; anterolateral margins with six spines that are accompanied with well-developed accessory spines that are spiniform in shape. The palm of chelipeds in juveniles can have one to four spines, while in adults, the palm has three to six spines.
Due to the recurrent misidentifications between A. aculeatus and A. verrucosus in literature, determining the geographic distribution for these species has proved to be challenging. Nevertheless, based on the morphological characteristics provided by some authors, it seems that A. aculeatus has a more restricted geographic range, which encompasses the insular Caribbean. For instance, most of the material examined by
Type specimens. A. Paralectotype of Cancer aculeatus, Herbst, 1790, dry preserved carapace without setae and with most of the spines broken (
As a result of
In its natural habitat, the carapace of A. aculeatus exhibits an olive green to brown hue; but the carapace could be spotted with large beige spots (
Western Atlantic: USA (Florida, Dry Tortugas), Bahamas, Cuba, Puerto Rico, British Virgins Islands, St. Thomas, St. Croix, St. Martin, St. Barthélemy, Antigua, Guadeloupe, Martinique, and Barbados (
Mithrax verrucosus
H. Milne Edwards, 1832: 11, pl. 4 [type-locality: Martinique; type probably in
Mithrax verrucosus
variety —
Mithrax (Mithrax) verrucosus
—
Mithrax plumosus
Rathbun, 1901: 67 [type-locality: Puerto Real, Puerto Rico; holotype in
Amphithrax aculeatus
—
Amphithrax verrucosus
—
. Type material. Holotype of Mithrax plumosus Rathbun, 1901: Puerto Rico, Port Real, Vieques, Fish Hawk Expedition • 1 ovig., ♀ (CW: 37.0 mm; CL: 29.0 mm) (
USA, Florida, Big Pine Key • 3 ♂♂, 3 ♀♀, 3 ovig. ♀♀ (
Dorsal surface of carapace uniformly covered with closely-set granules of irregular size; there are a few blunt tubercles on the gastric, branchial and cardiac regions; spines are only present in the lateral margins. In fully developed males chelipeds massive, carpus dorsally smooth with few blunt, short tubercles dorsolaterally in some specimens, strong teeth on inner margins and the palm of the cheliped is smooth. Propodi of pereopods are without spines, but have the presence of long and short dark setae. Carapace is predominantly maroon in colour.
Colour in life. Young female of Amphithrax aculeatus (Herbst, 1790) (
Much of the ambiguity surrounding A. aculeatus and A. verrucosus originated when Rathbun described Mithrax pilosus and M. plumosus (
The G1 of A. verrucosus was described in detail by
Ontogenetic intraspecific variations in A. verrucosus from juveniles to adults are: juvenile specimens have short and long setae that are evenly distributed on the carapace, cheliped and third maxillipeds, while adults have much less setae or are devoid of setae in these regions. Some very small specimens may have few spines on the carapace, especially on branchial regions. Anterolateral margins with six to eight spines on juveniles, whereas adults have eight spines. Younger specimens and females with strong short spines dorsally on the carpus of the cheliped, which are not present in fully developed adults, remaining only inner carpal spines. The carapace spines on the branchial region, along with the spines dorsally on carpus in young specimens may have led some authors to confuse A. verrucosus with A. aculeatus. It is important to note that even in very small specimens, the palm of the cheliped and the propodus of pereopods in A. verrucosus lack spines. Amphithrax verrucosus is very abundant in Barbados as well and specimens were collected by hand and with caged crab traps on the west and south coasts of Barbados.
Colour in life for A. verrucosus is carapace predominantly maroon and maroon mixed with white spots on ventral surface. Some specimens are more brownish, with light spots on the carapace (
Western Atlantic: USA (South Carolina to Florida), Gulf of Mexico, Cuba, Jamaica, Puerto Rico, Virgin Islands, St. Maarten, Honduras, Antigua, Belize, Guadeloupe, Isla de Aves, Martinique, Barbados, Grenada, Trinidad and Tobago, Bonaire, Curaçao, Aruba, Colombia, Venezuela, and Brazil, from Fernando de Noronha to São Paulo (
Specimens of A. aculeatus are a close match to the plate of Cancer aculeatus by Herbst (1790) and Mithrax pilosus by
Although the phylogenetic analysis performed supports the monophyly of the genus Amphithrax, the ML shows low support for this topology in contrast with the BI analysis (ML = 52%, Pp = 0.99). Nevertheless, the molecular separation of A. aculeatus and A. verrucosus as two different species and sister taxa is well supported and, in our phylogenetic tree, both species occupy distinct phylogenetic clusters (Fig.
The phylogenetic analysis suggests that the taxonomic assignment of Amphithrax armatus within the Amphithrax is questionable. Amphithrax armatus aligns with species of Maguimithrax and Mithrax; however, the support for this relationship is low.
Our study underscores the importance of employing an approach that incorporates both morphology and molecular analysis in biodiversity research. We also emphasise the importance of utilising morphological characters such as the G1 in Brachyura for species identification in taxonomic studies.
Based on the evidence provided, we proposed a taxonomic revaluation, elevating A. verrucosus from junior subjective synonym to valid species status. This would bring the total number of species in the genus Amphithrax, sensu stricto to 11: A. aculeatus, A. armatus, A. bellii (Gerstaecker, 1857), A. besnardi (Melo, 1990), A. braziliensis (Rathbun, 1892), A. caboverdianus, A. clarionensis (Garth, 1940), A. hemphilli (Rathbun, 1892), Amphithrax leucomelas (Desbonne, in Desbonne & Schramm, 1867), A. tuberculatus (Stimpson, 1860), and A. verrucosus (H. Milne Edwards, 1832).
Additionally, the information provided in our study contributes to the existing body of data (morphological and molecular) that can be valuable for future taxonomic investigations within the superfamily Majoidea and biodiversity research in Caribbean Island hotspots.
We are indebted to Dr. Angela Fields for assistance with specimen collection. The authors would like to thank Mr. Kirk Mayers, Dr. Darren Brown and Ms. Kim Ashby for their assistance with laboratory equipment. We thank Professor Julia Horrocks for reviewing an earlier draft of this MS. We are also thankful to Ms. Tassia Turini, Dr. Jessica Colavite, Laira Lianos, Michelle Mollemberg and other members of the LSZ Laboratory in Brazil for their assistance with the Barbados material and Professor Marcos Tavares and his team at the Museum of University of São Paulo, Brazil, for their assistance with the cataloguing of brachyuran crab specimens from Barbados. We would also like to thank Dr. Laure Corbari, Professor Joseph Poupin and Dr. Kristina von Rintelen from
Phylogenetic trees of individual datasets of 12S, 16S, and ITS-1 genes
Data type: tif
Explanation note: ML reconstruction for individual datasets of 12S, 16S and ITS-1 genes, represented as a maximum likelihood phylogram with maximum likelihood bootstrap values and Bayesian posterior probability (black diamond = ≤ 50% support).
Specimens used in the molecular analysis of
Data type: tif
Explanation note: Habitus, dorsal view of carapace of Amphithrax verrucosus (H. Milne Edwards, 1832). A